View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_high_54 (Length: 227)
Name: NF14504_high_54
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_high_54 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 46914578 - 46914386
Alignment:
| Q |
17 |
acatcaaacaataaattccaagaaattacagcataccttttattttctttcacaaaaagatnnnnnnnncctagagattagtactatgataactgaaaac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46914578 |
acatcaaacaataaattccaagaaattacagcatactttttattttctttcacaaaaagataaaaaaaacctagagattagtactatgataactgaaaac |
46914479 |
T |
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| Q |
117 |
aaacaaaactatttaatctctgcaattatnnnnnnnncaaaacaacattgaaacaccaaaatgtccttctccaacccccaccaacacaccccc |
209 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46914478 |
aaacaaaactatttaaactctgcaattataaaaaaaacaaaacaacattgaaacaccaaaatgtccttctccaacccccaccaacacaccccc |
46914386 |
T |
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