View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_low_10 (Length: 439)
Name: NF14504_low_10
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_10 |
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| [»] scaffold0768 (2 HSPs) |
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Alignment Details
Target: scaffold0768 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: scaffold0768
Description:
Target: scaffold0768; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 128 - 384
Alignment:
| Q |
19 |
aattaggctttgatactattattgataaaggtgaacaagtttctaacaatttgttaccatattgttctgtaacttgatcatggcaaggttaagttatatc |
118 |
Q |
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| T |
128 |
aattaggctttgatactatt---gataaaggtgaacaagtttctaacaatttgttaccatattgttctgtaacttgatcatggcaaggttaagttatata |
224 |
T |
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| Q |
119 |
taaaggaggaagatttattattgagagaaaaaaggtggtaagatgttgctttgaaaaaggttatacaatgtgtggctatgtgtctatggagtggatgaaa |
218 |
Q |
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| T |
225 |
taaaggaggaagatatattattgagagaaaaagggtggtaagatgttgctttgaaaaaggttatacaatgtgtggctatgtgtctatggagtggatgaaa |
324 |
T |
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| Q |
219 |
acttattttataggtataatacaatcaattctcagcacttgcagcaaaaggacaaacata |
278 |
Q |
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| T |
325 |
acttattttataggtataatacaatcaattctcagcacttgcaacaaaaggacaaacata |
384 |
T |
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Target: scaffold0768; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 286 - 429
Target Start/End: Original strand, 460 - 604
Alignment:
| Q |
286 |
tgaactttctttatttcgattttattttttgtgttgcaatagatacaatgaaaatgaataaaacaaaagtattat-annnnnnnnataaagcacataaaa |
384 |
Q |
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| T |
460 |
tgaactttctttatttcgaattttttttgtgtgttgcaatagatacaatgaaaatgaatgaaacaaaagtattataattttttttataaagcacacaaaa |
559 |
T |
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| Q |
385 |
cgatgtttttgtcacatttaaacaaattttgtcattggatttcat |
429 |
Q |
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| T |
560 |
caatgtttttgtcacattttaacaaattttgtcattggatttcat |
604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 6845868 - 6845795
Alignment:
| Q |
113 |
tatatctaaaggaggaagatttattattgagagaa-aaaaggtggtaagatgttgcttt-gaaaaaggttatac |
184 |
Q |
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| T |
6845868 |
tatatataaaggaggaagatttattattgagagaaaaaaatgtggtaaggtgttggtttggaagaaggttatac |
6845795 |
T |
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