View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14504_low_11 (Length: 437)
Name: NF14504_low_11
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 6 - 421
Target Start/End: Original strand, 7211558 - 7211976
Alignment:
| Q |
6 |
gacatcatcaacatggaaggtggcaggctcggattggaagggttgcaggaaacaaggacttgtatcttggtacatttagtaagttccctatcctccttcg |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7211558 |
gacaccatcaacatggaaggtggcaggctcggattggaagggttgcaggaaacaaggacttgtatcttggtacatttagtaagttccctatcctccttcg |
7211657 |
T |
|
| Q |
106 |
ctatattctatatcctttgacgaaatcacgatgacaccatgattttgttaaattaagtatttcctccttacttatgtacaaagttataagtgctttgacg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7211658 |
ctatattctatatcctttgacgaaatcacgatgacaccatgattttgttaaattaagtatt---tccttacttatgtacaaagttataagtgctttgacg |
7211754 |
T |
|
| Q |
206 |
aaatcacg--atggcaccatgattttgtcgaagctccaaaatcacaccgcaaatccaaacctacgcattcattctattttgcattgttgttaagcatg-- |
301 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7211755 |
aaatcatgatatggcaccatgattttgtcgaagctccaaaatcacaccgcaaatccaaacctacgcattcattctattttgcattgttgttaagcatgat |
7211854 |
T |
|
| Q |
302 |
--atagtgtgaaatataatctgacttttatgatatcatgttctagtttaattgagtatcttgatattttatctaattagtgagccataaaaattatatag |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7211855 |
atatagtgtgaaatataatctgacttttatgatatcatgttctagtttaattgagtatcttgatattttatctaattagtgagccataaaaattatatag |
7211954 |
T |
|
| Q |
400 |
gcacgcaagaagaggctgcaga |
421 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
7211955 |
gcacgcaagaagaggctgcaga |
7211976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 30618768 - 30618714
Alignment:
| Q |
6 |
gacatcatcaacatggaaggtggcaggctcggattggaagggttgcaggaaacaa |
60 |
Q |
| |
|
|||||||||||||||| || ||||| ||| |||||||||| |||||||| ||||| |
|
|
| T |
30618768 |
gacatcatcaacatggtagatggcaagctaggattggaagagttgcaggcaacaa |
30618714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University