View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_low_12 (Length: 425)
Name: NF14504_low_12
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_12 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 14 - 425
Target Start/End: Original strand, 39076970 - 39077381
Alignment:
| Q |
14 |
cctgtgttgagttgtttgttcttgagattatatcagaagagtagctttgaaaattcatagattcaccaacagaagttgttggaaaaaatgctatagcatc |
113 |
Q |
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| T |
39076970 |
cctgtgttgagttgtttgttcttgagattatatcagaagagtagctttgaaaattcatagattcaccaacagaagttgttggaaaaaatgctatagcatc |
39077069 |
T |
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| Q |
114 |
attatcaatagttgattgaatgaaacctgaatggttatggttatgatgattgttctgctgcaaattgtaaccagaagattctgattgttctgctgcaata |
213 |
Q |
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| T |
39077070 |
attatcaatagttgattgaatgaaacctgaatggttatggttatgatgattgttctgctgcaaattgtaaccagaagattctgattgttctgctgcaata |
39077169 |
T |
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| Q |
214 |
accatttcatttgtttctactgcatttttattattattctcttcctcttgtaactcttctgttgcatttggaattggattccatggtggaagctgatcaa |
313 |
Q |
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| T |
39077170 |
accatttcatttgtttctactgcattattattattattctcttcctcttgtaactcttctgttgcatttggaattggattccatggtggaagctgatcaa |
39077269 |
T |
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| Q |
314 |
gtttgtcaatggcagacttagcctttttgataagccaatcaacagctttactcggtctgtcgtagccgagacggtcttgaacatcatagaattgaattgc |
413 |
Q |
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| T |
39077270 |
gtttgtcaatggcagacttagcctttttgataagccaatcaacagctttactcggtctgtcgtagccgagacggtcttgaacatcatagaattgaattgc |
39077369 |
T |
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| Q |
414 |
tgtgtgtgctga |
425 |
Q |
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| T |
39077370 |
tgtgtgtgctga |
39077381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 425
Target Start/End: Original strand, 30768268 - 30768407
Alignment:
| Q |
286 |
attggattccatggtggaagctgatcaagtttgtcaatggcagacttagcctttttgataagccaatcaacagctttactcggtctgtcgtagccgagac |
385 |
Q |
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||||||| |||||| ||||||| | || |||||||||| |||||| || || ||||| |||||||| || ||||| || ||||||||||||||||| | |
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| T |
30768268 |
attggatgccatggaggaagctccgcgagcttgtcaatggaagactttgctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggc |
30768367 |
T |
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| Q |
386 |
ggtcttgaacatcatagaattgaattgctgtgtgtgctga |
425 |
Q |
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| T |
30768368 |
gatcttgaacatcgtagaattcgatggctgtgtgtgctga |
30768407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 425
Target Start/End: Complemental strand, 22328106 - 22328006
Alignment:
| Q |
325 |
gcagacttagcctttttgataagccaatcaacagctttactcggtctgtcgtagccgagacggtcttgaacatcatagaattgaattgctgtgtgtgctg |
424 |
Q |
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||||| ||||| ||||| || |||||||| || |||||||| || | ||||||||||||||| ||||| || || ||||||||||| || ||||| |||| |
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| T |
22328106 |
gcagatttagcttttttaatgagccaatcgactgctttacttggccggtcgtagccgagacgatcttgcacgtcgtagaattgaatcgcagtgtgggctg |
22328007 |
T |
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| Q |
425 |
a |
425 |
Q |
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| T |
22328006 |
a |
22328006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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