View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_low_15 (Length: 416)
Name: NF14504_low_15
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 10 - 416
Target Start/End: Original strand, 6387800 - 6388206
Alignment:
| Q |
10 |
aagcataggtgcaagtaaggaagaaagcactgaaatattctagtaaatagaagacttgatgaaaacagaaccatgaaattaaatataacatgctggcaaa |
109 |
Q |
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| T |
6387800 |
aagcaaaggtgcaagtaaggaagaaagcactgaaatattctagtaaatagaagaattgatgaaaacagaaccatgaaattaaatataacatgctggcaaa |
6387899 |
T |
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| Q |
110 |
ccttgcaaacagagaactgactcgtctcaggcgccataatcgcaacatgttaagaagtttgaaaccaagctcactgtcataagtagtgaagaggagacta |
209 |
Q |
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| T |
6387900 |
ccttgcaaacagagaactgactcgtctcaggcgccataatcgcaacatgttaagaagtttgaaaccaagctcactgtcataagtagtgaagaggagacta |
6387999 |
T |
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| Q |
210 |
ataggctcaagtggtgctgttgagcagatatccaaaacaaaccaggtggacatgtaactacatgttgtgtagaaatttgaaaagtaagtagggattttcg |
309 |
Q |
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| T |
6388000 |
atgggctcaagtggtgctgttgagcagatatccaaaacaaaccaggtggacatgtaactacatgttgtgtagaaatttgaaaagtaagtagggattttcg |
6388099 |
T |
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| Q |
310 |
acattcaatttagtttctaaggaagaaaagtttatatctatatatatcacctggttgcaattttctttggatcatcaatgagaagagaagaatgactatc |
409 |
Q |
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| T |
6388100 |
acattcaatttagtttctaaggaagaaaagtttatatctatatatatcacctggttgcaattttctttggatcatcaatgagaagagaagaatgactatc |
6388199 |
T |
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| Q |
410 |
gtggtat |
416 |
Q |
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| T |
6388200 |
gtggtat |
6388206 |
T |
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