View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_low_17 (Length: 401)
Name: NF14504_low_17
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 32802560 - 32802351
Alignment:
| Q |
11 |
gattatactcagtgaatgtgtttgtggcagtatgggttttggtggtaggatttggattaggaggatgggcaagtatgcttaatttcgtacaccaaattaa |
110 |
Q |
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| T |
32802560 |
gattatactcagtgaatgtgtttgtggcagtatgggttttggtggtaggatttggattaggaggatgggcaagtatgcttaatttcgtacaccaaattaa |
32802461 |
T |
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| Q |
111 |
aacatttgggctatttgctaagtgctttcagtgtcctcctcataaggcttaattagctctctaattttttgtgacactctcaatttcagatcatacatgt |
210 |
Q |
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| T |
32802460 |
aacatttgggctatttgctaagtgctttcagtgtcctcctcataaggcttaattagctctctaattttttgtgacactctcaatttcagatcatacatgt |
32802361 |
T |
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| Q |
211 |
gtgtaaagag |
220 |
Q |
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| T |
32802360 |
gtgtaaagag |
32802351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 291 - 381
Target Start/End: Complemental strand, 32802280 - 32802187
Alignment:
| Q |
291 |
agaagccagacaa---gtgatgttgattgtatcagctaattaaaggtgtgatggcaatcagggccaccccttataccaacttaatcacaattag |
381 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32802280 |
agaagccagacaattagtgatgttgattgtatcagctaattaaaggtgtgatggcaatcagggccaccccttataccaacttaatcacaattag |
32802187 |
T |
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