View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14504_low_18 (Length: 401)
Name: NF14504_low_18
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 5 - 383
Target Start/End: Original strand, 38316186 - 38316564
Alignment:
| Q |
5 |
caagaatatatggaatttgataacgaggtagaacaaagggaatcacaatttgcgggtatatgcgcttctatgatccttgcacatgatttgccctttaatt |
104 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38316186 |
caagaaaatatggaatttgataacgaggtagaacaaagggaatcacaatttgcgggtatatgcgcttctatgatccttgcacatgatttgccctttaatt |
38316285 |
T |
|
| Q |
105 |
ttttggagctcgaggtaatgaggaagtacactgagttcttaaatccaaatgctgttatacctccgacaaatgttattgaggcttatgtttcgcatttgta |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38316286 |
ttttggagctcgaggtaatgaggaagtacactgagttcttaaatccaaatgctgttatacctccgacaaatgttattgaggcttatgtttcgcatttgta |
38316385 |
T |
|
| Q |
205 |
cacgaaagagaaactaaagcttaaacaagaattggctagcattcctaataggatatctttaacttttgatttgtgggaatctaacaccactgagacttat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38316386 |
cacgaaagagaaactaaagcttaaacaagaattggctagcattcctaataggatatctttaacttttgatttgtgggaatctaacaccactgagacttat |
38316485 |
T |
|
| Q |
305 |
atttgtttgacagctcattttgttgacgcgaattggaagttgaatagtaaggttctcaactttcgtcttgtttaccctc |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38316486 |
atttgtttgacagctcattttgttgacgcgaattggaagttgaatagtaaggttctcaactttcgtcttgtttaccctc |
38316564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 68 - 363
Target Start/End: Original strand, 38325094 - 38325389
Alignment:
| Q |
68 |
gcttctatgatccttgcacatgatttgccctttaattttttggagctcgaggtaatgaggaagtacactgagttcttaaatccaaatgctgttatacctc |
167 |
Q |
| |
|
||||||||||||||||||| |||||| |||||| |||||||||||| ||||| |||||||| |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
38325094 |
gcttctatgatccttgcacttgatttaccctttgattttttggagcacgagggaatgaggaggtacactgagactttaaatcgaaatgctgttatacctc |
38325193 |
T |
|
| Q |
168 |
cgacaaatgttattgaggcttatgtttcgcatttgtacacgaaagagaaactaaagcttaaacaagaattggctagcattcctaataggatatctttaac |
267 |
Q |
| |
|
| ||||||||||||||||||||||| | |||||||||| |||||||||| |||||||||||| ||||||||| ||||||||||||| |||||||||| |
|
|
| T |
38325194 |
ctacaaatgttattgaggcttatgtcactcatttgtacatgaaagagaaatctaagcttaaacaacaattggctaccattcctaatagggtatctttaac |
38325293 |
T |
|
| Q |
268 |
ttttgatttgtgggaatctaacaccactgagacttatatttgtttgacagctcattttgttgacgcgaattggaagttgaatagtaaggttctcaa |
363 |
Q |
| |
|
||||||||||||||||||| ||| ||| | |||| |||||| |||| ||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
38325294 |
ttttgatttgtgggaatcttgcactactatgccttacatttgtctgaccgctcattttgttgacgcgaattggaaggtaaatagtaaggttctcaa |
38325389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 61 - 366
Target Start/End: Original strand, 38305514 - 38305819
Alignment:
| Q |
61 |
tatatgcgcttctatgatccttgcacatgatttgccctttaattttttggagctcgaggtaatgaggaagtacactgagttcttaaatccaaatgctgtt |
160 |
Q |
| |
|
|||||| ||||||||||||||| || ||||||| |||||| | ||||| |||| ||||| |||||||| | || || |||||||||||||| |||| |
|
|
| T |
38305514 |
tatatgtgcttctatgatcctttcaaatgattttccctttgagttttttgagcgcgaggggatgaggaacttcatgaaggtcttaaatccaaatattgtt |
38305613 |
T |
|
| Q |
161 |
atacctccgacaaatgttattgaggcttatgtttcgcatttgtacacgaaagagaaactaaagcttaaacaagaattggctagcattcctaataggatat |
260 |
Q |
| |
|
| ||||| | ||||||||||||||||||| || |||| |||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38305614 |
ttgcctcctgtagatgttattgaggcttatgtctctgatttatacatgaaagagaaactgaagcttaaacaagaattggctaccattcctaataggatat |
38305713 |
T |
|
| Q |
261 |
ctttaacttttgatttgtgggaatctaacaccactgagacttatatttgtttgacagctcattttgttgacgcgaattggaagttgaatagtaaggttct |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || ||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
38305714 |
ctttaacttttgatttgtgggaatctaacactgctgagacttatatctgtttgactgcgcattttgttgacgcggattggaagttaaatagtaaggttct |
38305813 |
T |
|
| Q |
361 |
caactt |
366 |
Q |
| |
|
|||||| |
|
|
| T |
38305814 |
caactt |
38305819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 68 - 362
Target Start/End: Original strand, 38320347 - 38320641
Alignment:
| Q |
68 |
gcttctatgatccttgcacatgatttgccctttaattttttggagctcgaggtaatgaggaagtacactgagttcttaaatccaaatgctgttatacctc |
167 |
Q |
| |
|
||||||||||||||| || ||||||| |||||| ||||||| |||| ||||| ||||| || | || || |||||||||||||||||||||| |||| |
|
|
| T |
38320347 |
gcttctatgatcctttcaaatgattttccctttgatttttttgagcgcgagggtatgagtaacttcatgaaggtcttaaatccaaatgctgttatgcctc |
38320446 |
T |
|
| Q |
168 |
cgacaaatgttattgaggcttatgtttcgcatttgtacacgaaagagaaactaaagcttaaacaagaattggctagcattcctaataggatatctttaac |
267 |
Q |
| |
|
| | |||||||||| |||||||||| ||| ||||||||||||||| |||||| ||||||||||| || ||||||| |||||||||||||||||||||||| |
|
|
| T |
38320447 |
ctataaatgttattaaggcttatgtctcggatttgtacacgaaagcgaaactcaagcttaaacaggatttggctaccattcctaataggatatctttaac |
38320546 |
T |
|
| Q |
268 |
ttttgatttgtgggaatctaacaccactgagacttatatttgtttgacagctcattttgttgacgcgaattggaagttgaatagtaaggttctca |
362 |
Q |
| |
|
| ||||| |||||||||| ||| || |||||||||||||||||||| |||||||||| ||||||||||||||| || || ||||||||||||| |
|
|
| T |
38320547 |
tgttgatctgtgggaatcatgcactaccgagacttatatttgtttgaccgctcattttgctgacgcgaattggaaattaaagagtaaggttctca |
38320641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 142 - 383
Target Start/End: Original strand, 38312910 - 38313155
Alignment:
| Q |
142 |
cttaaatccaaatgctgttatacctccgacaaatgttattgaggcttatgtttcgcatttgtacacgaaagagaaactaaagcttaaacaagaattggct |
241 |
Q |
| |
|
|||||||||||||| |||||| ||||| |||||||| ||||||||||||| || ||||||||||||| ||||||| |||||||| |||||||||||| |
|
|
| T |
38312910 |
cttaaatccaaatgttgttatgcctccttcaaatgttcttgaggcttatgtctccgatttgtacacgaatcagaaactcaagcttaagcaagaattggct |
38313009 |
T |
|
| Q |
242 |
agcattcctaata----ggatatctttaacttttgatttgtgggaatctaacaccactgagacttatatttgtttgacagctcattttgttgacgcgaat |
337 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||| |||||| |
|
|
| T |
38313010 |
accattcctaataaataggatatctttaacttttgatttgtgggaatctaatactactgagacttatatttgtttgactgctcatttcgttgatgcgaat |
38313109 |
T |
|
| Q |
338 |
tggaagttgaatagtaaggttctcaactttcgtcttgtttaccctc |
383 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
38313110 |
tggaagttaaatagtaaagttctcaacttctgtcttgtttaccctc |
38313155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 198 - 377
Target Start/End: Original strand, 38299732 - 38299911
Alignment:
| Q |
198 |
atttgtacacgaaagagaaactaaagcttaaacaagaattggctagcattcctaataggatatctttaacttttgatttgtgggaatctaacaccactga |
297 |
Q |
| |
|
|||||||||| |||||||||| || |||||||| | |||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
38299732 |
atttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaacttttgatctgtgggaatctaacactgctga |
38299831 |
T |
|
| Q |
298 |
gacttatatttgtttgacagctcattttgttgacgcgaattggaagttgaatagtaaggttctcaactttcgtcttgttt |
377 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||| |||||||||| |||||||||||||| || || ||||||||| |
|
|
| T |
38299832 |
gacttatatctgtttgaccgctcattttgttgacgcggattggaagttaaatagtaaggttcttaatttctgtcttgttt |
38299911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 199 - 383
Target Start/End: Original strand, 38308385 - 38308569
Alignment:
| Q |
199 |
tttgtacacgaaagagaaactaaagcttaaacaagaattggctagcattcctaataggatatctttaacttttgatttgtgggaatctaacaccactgag |
298 |
Q |
| |
|
|||||||||| ||||||||| ||||| |||||| || |||||| ||||||| ||| |||||||||||| ||||| |||||||||||| || |||| |
|
|
| T |
38308385 |
tttgtacacggaagagaaacataagctcaaacaacaactggctaccattccttataagatatctttaacctttgagttgtgggaatcttgtactactggc |
38308484 |
T |
|
| Q |
299 |
acttatatttgtttgacagctcattttgttgacgcgaattggaagttgaatagtaaggttctcaactttcgtcttgtttaccctc |
383 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||| |||||||||| ||||||||| || |||| || ||||||||| ||||| |
|
|
| T |
38308485 |
acttatatttgtttatccgctcattttgttggcgcggattggaagttaaatagtaagcttttcaatttctgtcttgttttccctc |
38308569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 383
Target Start/End: Complemental strand, 38851147 - 38850781
Alignment:
| Q |
17 |
gaatttgataacgaggtagaacaaagggaatcacaatttgcgggtatatgcgcttctatgatccttgcacatgatttgccctttaattttttggagctcg |
116 |
Q |
| |
|
|||||||||||||| ||||| |||| ||| |||| |||| || ||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
38851147 |
gaatttgataacgaagtagatcaaatggattcacgctttgtggaaatatgtgcttctacgatccttgcacatgatttgccctttcattttttcgagctcg |
38851048 |
T |
|
| Q |
117 |
aggtaatgaggaagtacactgagttcttaaatccaaatgctgttatacctccgacaaatgttattgaggcttatgtttcgcatttgtacacgaaagagaa |
216 |
Q |
| |
|
||| ||||||||||||| | |||||||||||||||||| | ||||||||| | ||||||||| || ||||| ||||| |||||||||||||||||||| |
|
|
| T |
38851047 |
agggaatgaggaagtactccgagttcttaaatccaaatattcctatacctcctagaaatgttatcgaagcttacgtttcacatttgtacacgaaagagaa |
38850948 |
T |
|
| Q |
217 |
actaaagcttaaacaagaattggctagcattcctaataggatatctttaacttttgatttgtgggaatctaacaccactgagacttatatttgtttgaca |
316 |
Q |
| |
|
|| |||||||||||| |||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38850947 |
acctaagcttaaacaacaattaactaccattcctaataggatatctttatcttttgatttgtgggaatctaacactactgagacttatatttgtttgact |
38850848 |
T |
|
| Q |
317 |
gctcattttgttgacgcgaattggaagttgaatagtaaggttctcaactttcgtcttgtttaccctc |
383 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||||| |||| |
|
|
| T |
38850847 |
gctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctc |
38850781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University