View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_low_19 (Length: 397)
Name: NF14504_low_19
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 6868398 - 6868729
Alignment:
| Q |
1 |
tttggataagggtgatttgtgtttgggggtatttgagattgggaggaagtggttttgatggagaagtggttttttagagaagctggtttgagtaggttgt |
100 |
Q |
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| T |
6868398 |
tttggataagggtgatttgtgtttgggggtatttgagattgggaggaagtgggtttgatggagaagtggttttttagagaagctggtttgagtaggttgt |
6868497 |
T |
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| Q |
101 |
gagtgtaaggaagaaacgttgccgttgagaagagaagccatagagataatttgtttggtggagtatgcaaagtgattatgtggtgtgtttaataatggtt |
200 |
Q |
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| T |
6868498 |
gagtgtaaggaagaaacgttgccgttgagaagagaagccatagaggaaattggtttggtggagtatgcaaagtgattatgtggtgtgtttaataatggtt |
6868597 |
T |
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| Q |
201 |
gtgtataagttcagcccttcttatcgtgtcgtgtgtgtcacacaagtacgtattagtttgtgtggggacccacccgttttggcataaaaatggctctgag |
300 |
Q |
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| T |
6868598 |
gtgtataagttcagcccttcttatcgtgtcgtgtgtgtcacacaagtacgtattagtttgtgtggggacccacccgttttggc-taaaaatggctctgag |
6868696 |
T |
|
| Q |
301 |
gaaaagaatcaaatcaaataaaataacatacct |
333 |
Q |
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| T |
6868697 |
gaaaagaatcaaatcaaatcaaataacatacct |
6868729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 14080365 - 14080228
Alignment:
| Q |
1 |
tttggataagggtgatttgtgtttgggggtatttgagattgggaggaagtggttttgatggagaagtggttttttagagaagctggtttgagtaggttgt |
100 |
Q |
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| T |
14080365 |
tttggataacggtgatttttgtttgggggtttttgagattggga---agtgggtttgatggagaagtgctttttttgagaagctggtttgagtgggttgt |
14080269 |
T |
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| Q |
101 |
gagtgtaaggaagaaacgttgccgttgagaagagaagccat |
141 |
Q |
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| T |
14080268 |
gggtgtaaggaagaaacgctgccgttgagaagagaagccat |
14080228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 14390393 - 14390256
Alignment:
| Q |
1 |
tttggataagggtgatttgtgtttgggggtatttgagattgggaggaagtggttttgatggagaagtggttttttagagaagctggtttgagtaggttgt |
100 |
Q |
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| T |
14390393 |
tttggataacggtgatttttgtttgggggtttttgagattggga---agtgggtttgatggagaagtgctttttttgagaagctggtttgagtgggttgt |
14390297 |
T |
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| Q |
101 |
gagtgtaaggaagaaacgttgccgttgagaagagaagccat |
141 |
Q |
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| T |
14390296 |
gggtgtaaggaagaaacgctgccgttgagaagagaagccat |
14390256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 295
Target Start/End: Complemental strand, 14080121 - 14080018
Alignment:
| Q |
181 |
tggtgtgtttaataatggttgtgtataagttcagcccttcttatcgtgtcgtgtgtgtcacacaagtacgtattagtttgtgtggggacccacccgtttt |
280 |
Q |
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||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||| |
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| T |
14080121 |
tggtgtgtttaataatggttgtgtataagttcaacc---cttatcatgtcgtgtgtgtcacac----acgtactagtttgtgtgggg----acccgtttt |
14080033 |
T |
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| Q |
281 |
ggcataaaaatggct |
295 |
Q |
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| T |
14080032 |
ggcatcaaaatggct |
14080018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 295
Target Start/End: Complemental strand, 14390149 - 14390046
Alignment:
| Q |
181 |
tggtgtgtttaataatggttgtgtataagttcagcccttcttatcgtgtcgtgtgtgtcacacaagtacgtattagtttgtgtggggacccacccgtttt |
280 |
Q |
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||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||| |
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| T |
14390149 |
tggtgtgtttaataatggttgtgtataagttcaacc---cttatcatgtcgtgtgtgtcacac----acgtactagtttgtgtgggg----acccgtttt |
14390061 |
T |
|
| Q |
281 |
ggcataaaaatggct |
295 |
Q |
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||||| ||||||||| |
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| T |
14390060 |
ggcatcaaaatggct |
14390046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 301 - 379
Target Start/End: Complemental strand, 47150072 - 47149994
Alignment:
| Q |
301 |
gaaaagaatcaaatcaaataaaataacatacctgagctagaaacgttggtggttccagatgaataagctatttctccag |
379 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||| |
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| T |
47150072 |
gaaatgaatcaaatcaaagaaaataacatacctgagctagaaacgttagtgtttccagatgaagaagctatttctccag |
47149994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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