View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14504_low_21 (Length: 375)

Name: NF14504_low_21
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14504_low_21
NF14504_low_21
[»] chr1 (2 HSPs)
chr1 (31-150)||(6444363-6444486)
chr1 (178-283)||(6444259-6444349)
[»] chr8 (3 HSPs)
chr8 (199-294)||(29731252-29731343)
chr8 (195-292)||(6653707-6653800)
chr8 (195-292)||(6734107-6734200)
[»] chr5 (1 HSPs)
chr5 (346-375)||(24895966-24895995)


Alignment Details
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 31 - 150
Target Start/End: Complemental strand, 6444486 - 6444363
Alignment:
Q  31 gtgtgaaaaaggacaggaccactctctaagtagaaa----atcatgtgcctacgatcagtgtttgtttgttggaaatgtcacagtggacattgcagtgca 126  Q
    |||||| |||||||||||||||||||||||||||||    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6444486 gtgtgacaaaggacaggaccactctctaagtagaaagaaaatcatgtgcatacgatcagtgtttgtttgttggaaatgtcacagtggacattgcagtgca 6444387  T
Q  127 aactggtttcacacagaagaacta 150  Q
    ||||||||||||||| ||||||||    
T  6444386 aactggtttcacacacaagaacta 6444363  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 178 - 283
Target Start/End: Complemental strand, 6444349 - 6444259
Alignment:
Q  178 tagaaaatcatgttgcgtgaccactaaaataatattttcctgttcttctcaacccattcattcaggccccgccaccaagtaggaggtgaaaaataatcta 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||    
T  6444349 tagaaaatcatgttgcgtgaccactaaaataatattttcctgttcttctcaa---------------cccgccaccaagtaggaggtgaaaaataatcta 6444265  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 199 - 294
Target Start/End: Original strand, 29731252 - 29731343
Alignment:
Q  199 cactaaaataatattttcctgttcttctcaacccattcattcaggccccgccaccaagtaggaggtgaaaaataatctaagattagttgtgttatg 294  Q
    ||||||||||||||||| |||||||||||||||||||    ||||||||||||||||| ||||||||| |||||||| | ||||| ||||||||||    
T  29731252 cactaaaataatatttttctgttcttctcaacccatt----caggccccgccaccaaggaggaggtgagaaataatccatgattaattgtgttatg 29731343  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 6653800 - 6653707
Alignment:
Q  195 tgaccactaaaataatattttcctgttcttctcaacccattcattcaggccccgccaccaagtaggaggtgaaaaataatctaagattagttgtgtta 292  Q
    |||||| |||||||||||||| | |||||||||||||||||||    ||||||||||| ||| |||||||||||||||||| | ||||| ||||||||    
T  6653800 tgaccattaaaataatatttttcagttcttctcaacccattca----ggccccgccactaaggaggaggtgaaaaataatccatgattaattgtgtta 6653707  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 6734200 - 6734107
Alignment:
Q  195 tgaccactaaaataatattttcctgttcttctcaacccattcattcaggccccgccaccaagtaggaggtgaaaaataatctaagattagttgtgtta 292  Q
    |||||| |||||||||||||| | |||||||||||||||||||    ||||||||||| ||| |||||||||||||||||| | ||||| ||||||||    
T  6734200 tgaccattaaaataatatttttcagttcttctcaacccattca----ggccccgccacaaaggaggaggtgaaaaataatccatgattaattgtgtta 6734107  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 375
Target Start/End: Complemental strand, 24895995 - 24895966
Alignment:
Q  346 attaatgaaaccaaatcaagcacagcacct 375  Q
    ||||||||||||||||||||||||||||||    
T  24895995 attaatgaaaccaaatcaagcacagcacct 24895966  T

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