View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_low_22 (Length: 374)
Name: NF14504_low_22
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_22 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 10 - 374
Target Start/End: Complemental strand, 11379658 - 11379296
Alignment:
| Q |
10 |
gcagaacctgtgggttcgtgtgtgttgcgtgcaacagtcaatttgggaaagaaaagggaaaaggaaaatgtgtgtgttctgttgttgagtgagtgctgag |
109 |
Q |
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| T |
11379658 |
gcagaaacggtgggttcgtgtgtgttgcgtgcagcagttgatttgggaaagaaaagggaaaaggaaaatgtgtgtgttctgttgttgagtgagtgctgag |
11379559 |
T |
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| Q |
110 |
aaaacaaaaatatttgtggctattgccacaccctgccctgttgaggtctgcccctgatgctcaccaacatttatacacagcgctaaaactacaactgagt |
209 |
Q |
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| T |
11379558 |
aaaacaaaaatatttgtggctattgccataccctgccctgctcaggtctgcccctgatgctcaccaacatttatacacaacgctaaaactacaactgagt |
11379459 |
T |
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| Q |
210 |
tgtgatcataccacttaaataagtgaaccgtggacaatgtgaattcatggttttgaaaacagtgaggctaagtgcgcctctcgtattgctccaaaagccc |
309 |
Q |
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| T |
11379458 |
tgtgatcataccacttaaataagtgaaccgtggacaatgtgaattcatggtttcgaaaacagtgaggctaagtgcgc--ctcgtattgctccaaaagccc |
11379361 |
T |
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| Q |
310 |
ctccccaaccctaagctatcttcggtaattcgagactcgagttggcattcaagtagacatttttc |
374 |
Q |
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| T |
11379360 |
ctcaccaaccctaagctatcttcggtaattcgagactcgagttggcattcaagtagacatttttc |
11379296 |
T |
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Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 166 - 340
Target Start/End: Original strand, 2579764 - 2579950
Alignment:
| Q |
166 |
atgctcaccaacatttatacacagcgctaaaactacaactgagttgtgatcataccacttaaataagtgaaccgtggacaatgtgaattcatggtt---- |
261 |
Q |
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| T |
2579764 |
atgctcaccaacatttacacacatctc--aaaccacgactgagttgtcgtcataccacttaaataagtgaaccgtggacaatgtcaattcatggttcaac |
2579861 |
T |
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| Q |
262 |
---ttg------aaaacagtgaggctaagtgcgcctctcgtattgctccaaaagcccctccccaaccctaagctatc-ttcggtaattc |
340 |
Q |
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| T |
2579862 |
cagttggtttcaaaaacagtgaggctaagtgcgcctctagtattgctccaaaagcccctcaccaaccataagctatctttcggtaattc |
2579950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 48898785 - 48898744
Alignment:
| Q |
124 |
tgtggctattgccacaccctgccctgttgaggtctgcccctg |
165 |
Q |
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| T |
48898785 |
tgtggctattgccacaccctgccctgctcaggtccgcccctg |
48898744 |
T |
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