View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_low_23 (Length: 367)
Name: NF14504_low_23
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 349
Target Start/End: Complemental strand, 5979820 - 5979480
Alignment:
| Q |
11 |
tcgaagaatatgtctattgtggtttaagtttaaacaattttcgaatactatatgttaaaggtaaattactaatcaagatgatccctatgtgcataaagaa |
110 |
Q |
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| T |
5979820 |
tcgaagaaaatgtctattgtggtttaagtttaaacaattttcgaatactatatgttaaaggtaaattactaatcaagatgatccctatgtgcataaagaa |
5979721 |
T |
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| Q |
111 |
aaagggaaatgatcaaaattgnnnnnnnnnnnctttt--cattcactctatacacgagttcttttttaaaattgaagggtcaatgagcaatctagtgtag |
208 |
Q |
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| T |
5979720 |
aaagggaaatgatcaaaattgttttttttttttttttttcattcactctatacatgagttcatttttaaaattgaagggtcaatgagcaatctagtgtag |
5979621 |
T |
|
| Q |
209 |
cacatataataaattgttggtccttatagtaagtgatagattcagacgagaactcaattaaaatttttaatataaggttgcttgcttataatcaagtacc |
308 |
Q |
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| T |
5979620 |
cacatataataaattgttggtccttatagtaagtgatagattcagatgagaactcaattaaaatttttaatataaggttgcttgcttataatcaagtacc |
5979521 |
T |
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| Q |
309 |
ttggatgaggtgatcctttaataggtttctgaccatacttc |
349 |
Q |
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| T |
5979520 |
ttggatgaggtgatcctttaataggtttctgaccatacttc |
5979480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 345
Target Start/End: Original strand, 39255752 - 39255795
Alignment:
| Q |
302 |
aagtaccttggatgaggtgatcctttaataggtttctgaccata |
345 |
Q |
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| T |
39255752 |
aagtaccttggatgaggtgaacctttaataggtttctgaccata |
39255795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 12166315 - 12166355
Alignment:
| Q |
305 |
taccttggatgaggtgatcctttaataggtttctgaccata |
345 |
Q |
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| T |
12166315 |
taccttggataaggtgaacctttaataggcttctgaccata |
12166355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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