View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_low_25 (Length: 360)
Name: NF14504_low_25
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_25 |
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| [»] scaffold0768 (1 HSPs) |
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Alignment Details
Target: scaffold0768 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0768
Description:
Target: scaffold0768; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 919 - 1220
Alignment:
| Q |
1 |
aagatatatttaaggatgtgtttactattaattcaatattgtagttcaaaaatctaaattgtttgtctacccnnnnnnnnnnnnnnnnnngtacacatag |
100 |
Q |
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| T |
919 |
aagatatatttaaggatgtgtttactattaattcaatattgtagttcaaaaatctaaattgtttgtctacccaaaaaatataaaataaaagtacacatag |
1018 |
T |
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| Q |
101 |
catgtggattcttttagtatttttggctcaagccaaatttacttttatgttagttatttgccttttccatttgtgtgcaaatatgacaaatacactcttt |
200 |
Q |
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| T |
1019 |
catgtggattcttttagtatttttggctcaagccaaatttacttttatgttagttatttgccttttccatttgtgtgcaaatatgacaaatacactcttt |
1118 |
T |
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| Q |
201 |
gactggtctaatttctgctcatcaacattcacctttgcatgtgacatgtcaaaaatttgtattaagttcatcttcttcctttaaagattcattaacttcc |
300 |
Q |
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| T |
1119 |
gactggtctatttcctgctcatcaacattcacctttgcatgtgacatgtcaaaaatttgtattaagttcatcttcttcctttaaagattcattaatttcc |
1218 |
T |
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| Q |
301 |
ag |
302 |
Q |
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| T |
1219 |
ag |
1220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 176 - 289
Target Start/End: Complemental strand, 18234973 - 18234861
Alignment:
| Q |
176 |
tgcaaatatgacaaatacactctttgactggtctaatttctgctcatcaacattcacctttgcatgtgacatgtcaaaaatttgtattaagttcatcttc |
275 |
Q |
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| T |
18234973 |
tgcaaatacgataaacaaactcattgactggtctaattcctactcatcaacattgaactgtgcatgtgacatgtc-aaaatttatattgggttcattttt |
18234875 |
T |
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| Q |
276 |
ttcctttaaagatt |
289 |
Q |
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| T |
18234874 |
ttcctttaaagatt |
18234861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 6845103 - 6845049
Alignment:
| Q |
199 |
ttgactggtctaatttctgctcatcaacattcacctttgcatgtgacatgtcaaa |
253 |
Q |
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| T |
6845103 |
ttgactggtctaattcctgctcatcaacattcaactgtgcatgtgacatgtcaaa |
6845049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 181
Target Start/End: Complemental strand, 6825969 - 6825884
Alignment:
| Q |
95 |
acatagcatgtggattcttttagtatttttggctcaagccaaatttacttttatgttagttatttgccttttccatttgtgtgcaaa |
181 |
Q |
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| T |
6825969 |
acatggcatgtgggttctcttagtaattgtggcacaagccaactttactttt-tgttagctattttgtttttccatttgtgtgcaaa |
6825884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 181
Target Start/End: Complemental strand, 6813976 - 6813892
Alignment:
| Q |
95 |
acatagcatgtggattcttttagtatttttggctcaagccaaa-tttacttttatgttagttatttgccttttccatttgtgtgcaaa |
181 |
Q |
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||||||||||||| |||| |||||| ||||| ||||||||| ||||||||| |||||| |||||| ||||||||||||||||||| |
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| T |
6813976 |
acatagcatgtgggttcta--agtattcttggcacaagccaaactttactttt-tgttagctatttggtttttccatttgtgtgcaaa |
6813892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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