View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_low_29 (Length: 346)
Name: NF14504_low_29
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_29 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 337
Target Start/End: Complemental strand, 7750976 - 7750646
Alignment:
| Q |
7 |
gcttgatgatctcaaacatgatgtatacgaattagagcaactattcgatgtgattgctactgatgcacgatcaaagggaaagatgtgacgctatctttca |
106 |
Q |
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| T |
7750976 |
gcttgatgatctcaaacatgatgtatacgaattagagcaactattcgatgtgattgctactgatgcacgatcaaagggaaagatgcgacgctatctttca |
7750877 |
T |
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| Q |
107 |
ctttttattaagcgaggatttgaagataggattgaagcattgatacagaacctagagtttcttgctgatcaaaaggatagattggcacttaacaaattta |
206 |
Q |
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| T |
7750876 |
ctttttattaagcgaggatttgaagataggattgaagcattgatacagaacctagagtttcttgctgatcaaaaggatagattgggacttaacaaattta |
7750777 |
T |
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| Q |
207 |
ctagtggtgattgtgaaattggagtcttgaaattgttaagagaatttagagctgtatcgaaaagttgtaatgacatatttgttggtaaagatggtagagt |
306 |
Q |
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| T |
7750776 |
ctagtggtgattgtgaaattggagtcttgaaattgttaagagaatttagagctgtatcgaaaagttgtaatgacatatttgttggtaaagatggtagagt |
7750677 |
T |
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| Q |
307 |
catcccccggatattaccaactgcacctttg |
337 |
Q |
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| T |
7750676 |
catcccccggatattaccaactgcacctttg |
7750646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 6590504 - 6590695
Alignment:
| Q |
7 |
gcttgatgatctcaaacatgatgtatacgaattagagcaactattcgatgtgattgctactgatgcacgatcaaagggaaagatgtgacgctatctttca |
106 |
Q |
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| T |
6590504 |
gcttgatgatatcaaacacgaggtatttgaattagagcaactattggatgtgattgctgatgacgcacaaccaaagggcaagatacgacgctttctttca |
6590603 |
T |
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| Q |
107 |
ctttttattaagcgaggatttgaagataggattgaagcattgatacagaacctagagtttcttgctgatcaaaaggatagattggcacttaa |
198 |
Q |
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| T |
6590604 |
cgttttattaatcgaggatttgaagctaggattaaagcattgatacagaacctagagtttcttgcagatcaaaaggataaattgggacttaa |
6590695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 6917997 - 6917808
Alignment:
| Q |
7 |
gcttgatgatctcaaacatgatgtatacgaattagagcaactattcgatgtgattgctactgatgcacgatcaaagggaaagatgtgacgctatctttca |
106 |
Q |
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| T |
6917997 |
gcttgatgatctcaaacacgaggtatatgaagtagaccaacttctagatgtgatttctactgacgcacaaccaaagggcaggatgcaacactttctttca |
6917898 |
T |
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| Q |
107 |
ctttttattaagcgaggatttgaagataggattgaagcattgatacagaacctagagtttcttgctgatcaaaaggatagattggcactt |
196 |
Q |
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| T |
6917897 |
ctttttagtaatcgaggatttgaggctaggattgaagcattgatacagaaggtagagtttcttgcagagaaacaggatagattgggactt |
6917808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 6721104 - 6721166
Alignment:
| Q |
7 |
gcttgatgatctcaaacatgatgtatacgaattagagcaactattcgatgtgattgctactga |
69 |
Q |
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| T |
6721104 |
gcttgataatctcaaacatgaggtatacgaagtagagcaactattggatgtgattgctactga |
6721166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 6883402 - 6883345
Alignment:
| Q |
17 |
ctcaaacatgatgtatacgaattagagcaactattcgatgtgattgctactgatgcac |
74 |
Q |
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| T |
6883402 |
ctcaaacattatgtatacgaattagatcaactattggatgtgattgcgactgacgcac |
6883345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 13269746 - 13269813
Alignment:
| Q |
7 |
gcttgatgatctcaaacatgatgtatacgaattagagcaactattcgatgtgattgctactgatgcac |
74 |
Q |
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| T |
13269746 |
gcttgatgatgtcagtaatgaggtatacgaattagagcaactattggatgtgattgttactgacgcac |
13269813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 13054 - 13099
Alignment:
| Q |
22 |
acatgatgtatacgaattagagcaactattcgatgtgattgctact |
67 |
Q |
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| T |
13054 |
acatgaggtatacgaagtagagcaactattggatgtgatggctact |
13099 |
T |
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