View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_low_3 (Length: 562)
Name: NF14504_low_3
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 16 - 557
Target Start/End: Original strand, 55942717 - 55943258
Alignment:
| Q |
16 |
cttgtgaccctatcttttcaagcatcaggtaaaatcagtactatccgaattactgttttgcaaagtttatcacattcagctagagagtttacttagtatt |
115 |
Q |
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| T |
55942717 |
cttgtgaccctatcttttcaagcatcaggtaaaatcagtattatccgaattactgttttgcaaagtttatcacattcagctagagagtttacttagtatt |
55942816 |
T |
|
| Q |
116 |
gttttaaaatgagttaaattaaaagtatatgtttcattgtgcaatatgttatttgatgatgatgagttattattggaaaatttcaggacaatttatggaa |
215 |
Q |
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| T |
55942817 |
gttttaaaatgagttaaattaaaagtatatgtttcattgtgcaatatgttatttgatgatgatgagttattattggaaaatttcaggacaatttttggaa |
55942916 |
T |
|
| Q |
216 |
tggtgcatagctgatgagcagaccccagatgatgatctgcagagggctatggattgggcttgtcatgtgggtggagcaaattgcagcaatatacaagtta |
315 |
Q |
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| T |
55942917 |
tggtgcatagctgatgagcagaccccagatgatgatctgcagagggctatggattgggcttgtcatgtgggtggagcaaattgcagcaatatacaagtta |
55943016 |
T |
|
| Q |
316 |
atcatccatgttaccttccaaataccatgaaggatcatgcttcctatgtcttcaacaattactatcagaagttcaagcacaaaggaggatcttgctattt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55943017 |
atcatccatgttaccttccaaataccatgaaggatcatgcttcctatgtcttcaacaattactatcagaagttcaagcacaaaggaggatcttgctattt |
55943116 |
T |
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| Q |
416 |
caactctgctgcaataaccagtgatctcgatccaagtaaataatctctcataattcatcttaaaagctatcaattttgatgctttatcctttcatttatt |
515 |
Q |
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| T |
55943117 |
caactctgctgcaataaccagtgatctcgatccaagtaaataatctctcataattcatcttaaaagctatcaatttttatgctttatcctttcatttatt |
55943216 |
T |
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| Q |
516 |
tacatatagtaacaattaggaagatacattgaatacctatgc |
557 |
Q |
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| T |
55943217 |
tacatatagtaacaattagtaagatacattgaatacctatgc |
55943258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 154 - 464
Target Start/End: Original strand, 55946220 - 55946527
Alignment:
| Q |
154 |
gtgcaatatgttatttgatgatgatgagttattattggaaaatttcaggacaatttatggaatggtgcatagctgatgagcagaccccagatgatgatct |
253 |
Q |
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||||||||| ||||| ||| |||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| |||| || || |||| || |
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| T |
55946220 |
gtgcaatatcttattagatcgtgatgagttatt---ggaaaatttcaggaaaatatatggaatggtgcatagctgatggacagatacctgacgatgtgct |
55946316 |
T |
|
| Q |
254 |
gcagagggctatggattgggcttgtcatgtgggtggagcaaattgcagcaatatacaagttaatcatccatgttaccttccaaataccatgaaggatcat |
353 |
Q |
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| T |
55946317 |
gcagagggccatggattacgcttgtcatgtggatggagtagattgcagcaagatacaagtgaaccaaccttgttaccttccaaatactgtgaaggatcat |
55946416 |
T |
|
| Q |
354 |
gcttcctatgtcttcaacaattactatcagaagttcaagcacaaaggaggatcttgctatttcaactctgctgcaataaccagtgatctcgatccaagta |
453 |
Q |
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|||||||||| ||||||| ||||||||||||||| ||||||||| ||||| |||||||||||||||| |||||||||||| |||| | || ||||||| |
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| T |
55946417 |
gcttcctatgccttcaacgattactatcagaagtacaagcacaagggaggctcttgctatttcaactatgctgcaataacaagtgcttctgacccaagta |
55946516 |
T |
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| Q |
454 |
aataatctctc |
464 |
Q |
| |
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||| ||||||| |
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| T |
55946517 |
aattatctctc |
55946527 |
T |
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Back To:
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