View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14504_low_30 (Length: 340)
Name: NF14504_low_30
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 10 - 326
Target Start/End: Complemental strand, 34432559 - 34432243
Alignment:
| Q |
10 |
catcatcatcatggagctgtgatacgttcaggtaaaaccgtttacatgtcagtatacagaacaaagttagctggtcactgcagtttgatcacaatcacat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34432559 |
catcatcatcatggagctgtgatacgttcaggtaaaaccgtttacatgtcagtatacagaacaaagttagctggtcactgccgtttgatcacaatcacat |
34432460 |
T |
|
| Q |
110 |
ggtgcaaaaacttgatgcttcatggcttatcagtaacagtggaaaaccctgaaaaggaaactcaatatagctgcaaggttgagctaaagccatggtactt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34432459 |
ggtgcaaaaacttgatgcttcatggcttatcagtaacagtggaaaaccctgaaaaggaaactcaatatagctgcaaggttgagctaaagccatggtactt |
34432360 |
T |
|
| Q |
210 |
ttggaggaaacaaggttcaaaacggttcacggtagatggaaaagcagttgatgtcttttgggaccttaaatctgcaaaattcaatggtgaaacagaacca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34432359 |
ttggaggaaacaaggttcaaaacggttcacggtagatggaaaagcagttgatgtcttttgggaccttaaatctgcaaaattcaatggtgaaacagaacca |
34432260 |
T |
|
| Q |
310 |
acttcagagtactatgt |
326 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34432259 |
acttcagagtactatgt |
34432243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 52 - 326
Target Start/End: Complemental strand, 43403447 - 43403170
Alignment:
| Q |
52 |
tacatgtcagtatacagaacaaagttagctggtcactgcagtttgatcacaatcacatggtgcaaaaacttgatgcttcatggcttatcagtaacagtgg |
151 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| ||| ||||||| || ||||||||||||||||||||| |||||||||| ||||| || |||| | |
|
|
| T |
43403447 |
tacatgtcagtatacagaacaaaggtagctgatcattgccgtttgataaccatcacatggtgcaaaaacttgttgcttcatggactatcaatatcagtag |
43403348 |
T |
|
| Q |
152 |
aaaaccctgaaaaggaaactcaatatagctgcaaggttgagctaaagccatggtacttttggaggaaacaaggttcaaaacggttcacggtagatgga-- |
249 |
Q |
| |
|
|| || ||| ||| | ||||||| |||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||| | || |||||| |
|
|
| T |
43403347 |
aaggtccagaaggagaagcccaatatacctgcaaagttgaactaaagccatggtatttttggagaaaacaaggttcaaaacggtttatagttgatggaaa |
43403248 |
T |
|
| Q |
250 |
-aaagcagttgatgtcttttgggaccttaaatctgcaaaattcaatggtgaaacagaaccaacttcagagtactatgt |
326 |
Q |
| |
|
||||| ||||| | || |||||||||||| |||| |||||||| || |||||||||||||||||||| |||||||| |
|
|
| T |
43403247 |
caaagctgttgacattttctgggaccttaaagctgctaaattcaacggagaaacagaaccaacttcagaatactatgt |
43403170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 26100060 - 26100171
Alignment:
| Q |
28 |
gtgatacgttcaggtaaaaccgtttacatgtcagtatacagaacaaagttagctggtcactgcagtttgatcacaatcacatggtgcaaaaacttgatgc |
127 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||||||||||||||| || | ||| || ||||| ||||||| |||||||||| |||| |||||||| | | |
|
|
| T |
26100060 |
gtgacacgttgaggtagaaccgtttacatgtcagtatacagaagaatggtagatgatcactctcgtttgattacaatcacatagtgcgaaaacttgcttc |
26100159 |
T |
|
| Q |
128 |
ttcatggcttat |
139 |
Q |
| |
|
||||||| |||| |
|
|
| T |
26100160 |
ttcatggtttat |
26100171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University