View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14504_low_32 (Length: 330)
Name: NF14504_low_32
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_32 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 7522018 - 7522323
Alignment:
| Q |
9 |
catcatcatgttgtgcgtcactcacatatatagttctcattgagttaacaaatctaaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttg |
108 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| || ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7522018 |
catcatcattttgtgcgtcactcacatatatagttctctttcagttaactaatcttaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttg |
7522117 |
T |
|
| Q |
109 |
ttgtcatcaatttcagagtcttgaaaccttattgattaatgatcgttataagctagtttcaattccacaacacacatatatcagggaagtagatctttgt |
208 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7522118 |
ttgtcatcagtttcagagtcttgaaaccttaatgattaatgattgttataagctagtttcaattccacaacacacatatatcagggaagtagatctttgt |
7522217 |
T |
|
| Q |
209 |
agagtatcttcagatatattacagcaagcagtcaatcattccaaagtagagtatcttcagataaattccatactcaatcttaaatctctctgtggagtgt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| |||||| | |||||||||||| | ||||||||| ||||||| | |
|
|
| T |
7522218 |
agagtatcttcagatatattacagcaagtagtcaatcattccaaactagaggatctacagatagaatccatactcaatttgaaatctctcagtggagtct |
7522317 |
T |
|
| Q |
309 |
ttcaac |
314 |
Q |
| |
|
|||||| |
|
|
| T |
7522318 |
ttcaac |
7522323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 7483961 - 7484266
Alignment:
| Q |
9 |
catcatcatgttgtgcgtcactcacatatatagttctcattgagttaacaaatctaaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttg |
108 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| || |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7483961 |
catcatcattttgtgcgtcactcacatatatagttctctttcagttaaataatcttaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttg |
7484060 |
T |
|
| Q |
109 |
ttgtcatcaatttcagagtcttgaaaccttattgattaatgatcgttataagctagtttcaattccacaacacacatatatcagggaagtagatctttgt |
208 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7484061 |
ttgtcatcagtttcagagtcttgaaaccttattgattaatgattgttataagctagtttcaattccacaacacacatatatcagggaagtagatctttgt |
7484160 |
T |
|
| Q |
209 |
agagtatcttcagatatattacagcaagcagtcaatcattccaaagtagagtatcttcagataaattccatactcaatcttaaatctctctgtggagtgt |
308 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| | ||| | |||||||||||| | |||||||| ||||||| | |
|
|
| T |
7484161 |
agagtatcttcagatatattacagcaactagtcaatcattccaaagtagagtctcttaatatagaatccatactcaatttgaaatctcttagtggagtct |
7484260 |
T |
|
| Q |
309 |
ttcaac |
314 |
Q |
| |
|
|||||| |
|
|
| T |
7484261 |
ttcaac |
7484266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 7530086 - 7530391
Alignment:
| Q |
9 |
catcatcatgttgtgcgtcactcacatatatagttctcattgagttaacaaatctaaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttg |
108 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7530086 |
catcatcatcttgtgcgtcactcacagatatagttctcattctgttaacaaatcttaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttg |
7530185 |
T |
|
| Q |
109 |
ttgtcatcaatttcagagtcttgaaaccttattgattaatgatcgttataagctagtttcaattccacaacacacatatatcagggaagtagatctttgt |
208 |
Q |
| |
|
||||||||| |||||||||||| ||| |||| ||| || | ||| ||| |||||||||||||||||||||| | |||||||||||||| |||| | |
|
|
| T |
7530186 |
ttgtcatcagtttcagagtcttaaaagattatcaatttctggttgttgtaatctagtttcaattccacaacacaaacatatcagggaagtaattcttag- |
7530284 |
T |
|
| Q |
209 |
agagtatcttcaga-tatattacagcaagcagtcaatcattccaaagtagagtatcttcagataaattccatactcaatcttaaatctctctgtggagtg |
307 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7530285 |
agaggtcagagagacgatattacagcaagcagtcaatcattccaaagtagagtatcttcagataaattccatactcaatcttaaatctctctgtggagtc |
7530384 |
T |
|
| Q |
308 |
tttcaac |
314 |
Q |
| |
|
||||||| |
|
|
| T |
7530385 |
tttcaac |
7530391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 7496360 - 7496665
Alignment:
| Q |
9 |
catcatcatgttgtgcgtcactcacatatatagttctcattgagttaacaaatctaaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttg |
108 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| |||| || |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7496360 |
catcatcattttgtgcgtcactcacagatatagctctctttcagttaaataatcttaaaggatggtgtaattgtagcgaagaagaaatctcaaggggttg |
7496459 |
T |
|
| Q |
109 |
ttgtcatcaatttcagagtcttgaaaccttattgattaatgatcgttataagctagtttcaattccacaacacacatatatcagggaagtagatctttgt |
208 |
Q |
| |
|
| ||||||| |||||||||||||||| |||| |||||| || || ||| |||||||||||||||||||||| | || ||||| ||||| |||| |
|
|
| T |
7496460 |
tcgtcatcagtttcagagtcttgaaagattatcgattaaatattgtcctaatctagtttcaattccacaacacaaacatgtcaggaaagtaatgctttca |
7496559 |
T |
|
| Q |
209 |
agagtatcttcagatatattacagcaagcagtcaatcattccaaagtagagtatcttcagataaattccatactcaatcttaaatctctctgtggagtgt |
308 |
Q |
| |
|
| || | | |||||||||||||||||||||||||||||||||||||||||| | ||| || |||||||||| |||||||||||||||| || | |
|
|
| T |
7496560 |
aatgtcacagagaagatattacagcaagcagtcaatcattccaaagtagagtatcttgatataggtttcatactcaattttaaatctctctgtggtgtct |
7496659 |
T |
|
| Q |
309 |
ttcaac |
314 |
Q |
| |
|
|||||| |
|
|
| T |
7496660 |
ttcaac |
7496665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 7720446 - 7720141
Alignment:
| Q |
9 |
catcatcatgttgtgcgtcactcacatatatagttctcattgagttaacaaatctaaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttg |
108 |
Q |
| |
|
||||||||| |||||||||||| | | ||||| |||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7720446 |
catcatcattttgtgcgtcacttaaagatatatttctttttgggttaacaaatctaaaaggatggtgtaactgtagcgaagaagaaatctcaaggggttg |
7720347 |
T |
|
| Q |
109 |
ttgtcatcaatttcagagtcttgaaaccttattgattaatgatcgttataagctagtttcaattccacaacacacatatatcagggaagtagatctttgt |
208 |
Q |
| |
|
||||||||| ||| | |||||||||| ||||| ||| || | ||| ||| ||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
7720346 |
ttgtcatcagtttaacagtcttgaaagcttatgtatttctgtttgttgtaatctagtttcaattccacaacacacatatatcagggaagtaattcttag- |
7720248 |
T |
|
| Q |
209 |
agagtatcttcaga-tatattacagcaagcagtcaatcattccaaagtagagtatcttcagataaattccatactcaatcttaaatctctctgtggagtg |
307 |
Q |
| |
|
|||| ||| || |||| || ||||||||||||||||||| |||||| |||| ||||| | |||||||||||| | |||||||| ||||||| |
|
|
| T |
7720247 |
agaggtcagagagacgatgttaccgccagcagtcaatcattccaaactagagtctcttgagatagaatccatactcaatttgaaatctcttagtggagtc |
7720148 |
T |
|
| Q |
308 |
tttcaac |
314 |
Q |
| |
|
||||||| |
|
|
| T |
7720147 |
tttcaac |
7720141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 314
Target Start/End: Original strand, 7502552 - 7502855
Alignment:
| Q |
11 |
tcatcatgttgtgcgtcactcacatatatagttctcattgagttaacaaatctaaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttgtt |
110 |
Q |
| |
|
||||||| |||||||| ||||||||||||| || | |||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
7502552 |
tcatcattttgtgcgttactcacatatatatatccttctcagttaagaaatctaaaaggatggtgtaactgtagcaaagaagaaatctcaaggggttgta |
7502651 |
T |
|
| Q |
111 |
gtcatcaatttcagagtcttgaaaccttattgattaatgatcgttataagctagtttcaattccacaacacacatatatcagggaagtagatctttgtag |
210 |
Q |
| |
|
||||||| | ||||||| ||||| ||||| |||| ||||| |||||||||||||||||||||| |||||||||||||||| | ||||| |||| | | |
|
|
| T |
7502652 |
gtcatcagtctcagagtattgaatacttatcgattgatgattgttataagctagtttcaattcctcaacacacatatatcaagaaagtaactcttagaaa |
7502751 |
T |
|
| Q |
211 |
agtatcttcagatatattacagcaagcagtcaatcattccaaagtagagtatcttcagataaattccatactcaatcttaaatctctctgtggagtgttt |
310 |
Q |
| |
|
|| | | |||||| |||||| ||||||| ||||||||||||||||||||||||| || ||| |||||| | |||||||| ||||||| ||| |
|
|
| T |
7502752 |
ggtcacagagaagatattaaagcaagtagtcaattattccaaagtagagtatcttcagatgtttttcatgctcaatttgaaatctcttagtggagtcttt |
7502851 |
T |
|
| Q |
311 |
caac |
314 |
Q |
| |
|
|||| |
|
|
| T |
7502852 |
caac |
7502855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 7716616 - 7716311
Alignment:
| Q |
9 |
catcatcatgttgtgcgtcactcacatatatagttctcattgagttaacaaatctaaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttg |
108 |
Q |
| |
|
||||||||| |||| ||||||| ||| ||||| |||| ||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
7716616 |
catcatcattttgtacgtcacttacagatatatttctttccgagttaaataatcttaaaggatggtgtaactgtagcgaagaagaaatctcaaggggctg |
7716517 |
T |
|
| Q |
109 |
ttgtcatcaatttcagagtcttgaaaccttattgattaatgatcgttataagctagtttcaattccacaacacacatatatcagggaagtagatctttgt |
208 |
Q |
| |
|
||||||||| ||| | || ||||||| ||||| ||| | ||| ||||||| |||||||||||||||||||||| | || ||||| ||||| || ||| |
|
|
| T |
7716516 |
ttgtcatcagtttgaaagacttgaaaacttatgtattcaagattgttataatctagtttcaattccacaacacaaacatgtcaggaaagta-atgcttga |
7716418 |
T |
|
| Q |
209 |
aga-gtatcttcagatatattacagcaagcagtcaatcattccaaagtagagtatcttcagataaattccatactcaatcttaaatctctctgtggagtg |
307 |
Q |
| |
|
| | || | | |||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||| |
|
|
| T |
7716417 |
aaatgtcacagagaagatattacagctagcagtcaatcattccaaagtagagtatcttcagataggtttcatactcaattataaatctctctgtggagtc |
7716318 |
T |
|
| Q |
308 |
tttcaac |
314 |
Q |
| |
|
||||||| |
|
|
| T |
7716317 |
tttcaac |
7716311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 61 - 314
Target Start/End: Complemental strand, 7127128 - 7126875
Alignment:
| Q |
61 |
tctaaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttgttgtcatcaatttcagagtcttgaaaccttattgattaatgatcgttataag |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||| |||| | || || ||| |
|
|
| T |
7127128 |
tctaaaaggatggtgtaagtgtagcgaagaagagatctcaaggggttgttgtcatcagtttcagagtcttgaaagattatcgattgaatattgtcctaac |
7127029 |
T |
|
| Q |
161 |
ctagtttcaattccacaacacacatatatcagggaagtagatctttgtagagtatcttcagatatattacagcaagcagtcaatcattccaaagtagagt |
260 |
Q |
| |
|
|||||||||||||||||||||| | || ||||| | ||| ||||| | || | | |||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
7127028 |
ctagtttcaattccacaacacaaacatgtcaggaatgtaattctttcaaatgtcacagagaagatattacaacaagcagtcaatcattcaaaagtagagt |
7126929 |
T |
|
| Q |
261 |
atcttcagataaattccatactcaatcttaaatctctctgtggagtgtttcaac |
314 |
Q |
| |
|
||||| |||||||| |||||| ||| | ||||||||| ||||| | ||||||| |
|
|
| T |
7126928 |
atcttaagataaatgacatactgaatttgaaatctctcagtggactctttcaac |
7126875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 314
Target Start/End: Complemental strand, 10477964 - 10477927
Alignment:
| Q |
277 |
catactcaatcttaaatctctctgtggagtgtttcaac |
314 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
10477964 |
catactcaattttaaatctctctgtggagtctttcaac |
10477927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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