View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_low_33 (Length: 326)
Name: NF14504_low_33
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 311
Target Start/End: Complemental strand, 21868544 - 21868245
Alignment:
| Q |
12 |
tatcactaagtggcttcaaatgtgtggagacaacattctttggagccacattttgcatctgagtagtgtttagcatgaaaccattttcagtactttgttg |
111 |
Q |
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| T |
21868544 |
tatcactaagtggcttcaaatgtgtggagacaacattctttggagccacattttgcatctgagtagtgtttagcatgaaaccattttcagttctttgttg |
21868445 |
T |
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| Q |
112 |
cattttctttagcatgctaattttgtgattacaagcttgaatcttgccatctagaataccaatgaaagttttgagctgttccccatccatgttcatgaag |
211 |
Q |
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| T |
21868444 |
cattttctttagcatgctaattttgtgattacaagcttgaatcttggcatctagaataccaatgaaagttttgagttgttccccatccatgttcatgaag |
21868345 |
T |
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| Q |
212 |
catgggtgccaagttggatacattttcatcacaatctctttgtgcactttggaaatctcaccttcaaccttattcttcttatttgcaaaatagtccttca |
311 |
Q |
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| T |
21868344 |
catgggtgccaagttggatacattttcatcacaatctctttgtgcactttggaaatctcaccttcaaccttattcttcttatttgcaaaatagtccttca |
21868245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 103 - 311
Target Start/End: Complemental strand, 21876326 - 21876118
Alignment:
| Q |
103 |
actttgttgcattttctttagcatgctaattttgtgattacaagcttgaatcttgccatctagaataccaatgaaagttttgagctgttccccatccatg |
202 |
Q |
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||||| |||||||||||| ||||||||||| | | || |||||||||||||||||| ||||||| ||||||||||||||||| |||||||||| |||| |
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| T |
21876326 |
actttcttgcattttcttcagcatgctaatccttttcttgcaagcttgaatcttgccacctagaatgccaatgaaagttttgagttgttccccattcatg |
21876227 |
T |
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| Q |
203 |
ttcatgaagcatgggtgccaagttggatacattttcatcacaatctctttgtgcactttggaaatctcaccttcaaccttattcttcttatttgcaaaat |
302 |
Q |
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| T |
21876226 |
ttcatgaagcatgggtgccaagttggatacattttcatcaagatctctttgtgtactttggaaatctcactttcaatcttattcttcttattttcaaaat |
21876127 |
T |
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| Q |
303 |
agtccttca |
311 |
Q |
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|||| |||| |
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| T |
21876126 |
agtctttca |
21876118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 122 - 311
Target Start/End: Original strand, 21819001 - 21819190
Alignment:
| Q |
122 |
agcatgctaattttgtgattacaagcttgaatcttgccatctagaataccaatgaaagttttgagctgttccccatccatgttcatgaagcatgggtgcc |
221 |
Q |
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|||||||||||| | |||| |||||||| ||||||| ||| || |||| || |||| | |||||| ||||| ||||||||||| ||||| ||||| | || |
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| T |
21819001 |
agcatgctaattctttgatcacaagcttcaatcttggcatttacaatagcagtgaaggctttgagttgttcaccatccatgttaatgaaacatggatccc |
21819100 |
T |
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| Q |
222 |
aagttggatacattttcatcacaatctctttgtgcactttggaaatctcaccttcaaccttattcttcttatttgcaaaatagtccttca |
311 |
Q |
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| T |
21819101 |
aagttggatacttgttcttcacaatctctttctgcactttggaaatctcaccttcaatcttattcttcttatttgcaaaatagtccttca |
21819190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 52000138 - 52000098
Alignment:
| Q |
124 |
catgctaattttgtgattacaagcttgaatcttgccatcta |
164 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||| |
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| T |
52000138 |
catgttaattttgtgattacaagcttgaatcttggcatcta |
52000098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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