View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14504_low_35 (Length: 314)

Name: NF14504_low_35
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14504_low_35
NF14504_low_35
[»] chr3 (1 HSPs)
chr3 (3-299)||(34432556-34432853)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 3 - 299
Target Start/End: Original strand, 34432556 - 34432853
Alignment:
Q  3 gatgatcatcacttgcagaagagaaacatgcaggaattccaattgagtcttgcattgttgttgatgatgagtttattggagagnnnnnnnngtgagaaga 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  34432556 gatgatcatcacttgcagaagagaaacatgcaggaattccaattgagtcttgcattgttgttgatgatgagtttattggagagaaaaaaaagtgagaaga 34432655  T
Q  103 tgaaaaggatgtgaacagattggagtgagagggaatttaacatgaatttaaggagtaggagatgagagaagagannnnnnnnatttaatagataaataaa 202  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |        ||||||||||||||||||    
T  34432656 tgaaaaggatatgaacagattggagtgagagggaatttaacatgaatttaaggagtaggagatgagagaagaaattttatttatttaatagataaataaa 34432755  T
Q  203 tttaggtgagttgggctcattagagtccggacatgtctcaaagctc-aaaaaacgtgttgacaaaaatacttgtagattacaccaacaaagtcttcat 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34432756 tttaggtgagttgggctcattagagtccggacatgtctcaaagctcaaaaaaacgtgttgacaaaaatacttgtagattacaccaacaaagtcttcat 34432853  T

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