View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_low_38 (Length: 299)
Name: NF14504_low_38
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_38 |
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| [»] scaffold0768 (1 HSPs) |
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Alignment Details
Target: scaffold0768 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: scaffold0768
Description:
Target: scaffold0768; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 586 - 870
Alignment:
| Q |
1 |
ttttgtcattggatttcatatc-acgttgattagaaaaattgtcacatcaccactttttaaatttaaaaatacgagggagagaccaaaaatctgaattta |
99 |
Q |
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| T |
586 |
ttttgtcattggatttcatgtctacgttgattaaaaaaattgtcacatcaccactttttaaatttaaaatgt----ggaaagaccaaaaatctgaattta |
681 |
T |
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| Q |
100 |
aaatataggagactagttttatgagcgtgaaaaaatgtaggtcaaaattggtccacattataggatatcaaaattgatacagaaaaaatcgaatatgata |
199 |
Q |
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| T |
682 |
aaagattggagactggttttatgagcgtggaaaaatgtaggttaaaattgatccacattatagaataccgaaattgatacaggaaaaatcgaatatgata |
781 |
T |
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| Q |
200 |
atttaagagaagtacattccaaaatctccaatcaataccattaaatcaacctaatcaagttgatgcccatattttgattatctgatgat |
288 |
Q |
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| T |
782 |
atttaagaggagtacatttcaaaatttccaatcaataccatcaaatcaacccaattaagttgatgcccatattttaattatctaatgat |
870 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 18235366 - 18235290
Alignment:
| Q |
73 |
gagggagagaccaaaaatctgaatttaaaatataggagactagttttatgagcgtgaaaaaatgtaggtcaaaattg |
149 |
Q |
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| T |
18235366 |
gagggaaagactaaatatctgaatttaaaagataggagaatagtgttatgagtacacaaaaatgtaggtcaaaattg |
18235290 |
T |
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