View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14504_low_42 (Length: 286)

Name: NF14504_low_42
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14504_low_42
NF14504_low_42
[»] chr2 (4 HSPs)
chr2 (3-271)||(37193031-37193295)
chr2 (162-235)||(22540192-22540265)
chr2 (238-267)||(44440451-44440480)
chr2 (238-267)||(45036122-45036151)
[»] scaffold0013 (2 HSPs)
scaffold0013 (162-235)||(54680-54753)
scaffold0013 (235-267)||(54827-54859)
[»] chr4 (3 HSPs)
chr4 (235-267)||(41940613-41940645)
chr4 (235-264)||(25969771-25969800)
chr4 (238-267)||(27184836-27184865)
[»] chr1 (2 HSPs)
chr1 (235-267)||(9427751-9427783)
chr1 (235-267)||(3620947-3620979)
[»] chr7 (6 HSPs)
chr7 (235-266)||(5464626-5464657)
chr7 (235-266)||(27046219-27046250)
chr7 (149-235)||(5464466-5464552)
chr7 (161-235)||(41029452-41029526)
chr7 (238-271)||(12501692-12501725)
chr7 (162-235)||(27046072-27046145)
[»] chr8 (2 HSPs)
chr8 (238-267)||(15243508-15243537)
chr8 (235-267)||(12607965-12607997)
[»] chr6 (2 HSPs)
chr6 (238-267)||(2443345-2443374)
chr6 (235-267)||(29047274-29047306)
[»] chr3 (2 HSPs)
chr3 (238-267)||(17508743-17508772)
chr3 (235-272)||(51160885-51160922)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 3 - 271
Target Start/End: Complemental strand, 37193295 - 37193031
Alignment:
Q  3 aagaatataagataatttgtggtttttataaaattagttggtttttataagagtgtatattgagacaaaatatgatatatcatatttttcttttggtggt 102  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| ||||||| ||    
T  37193295 aagaaaataagataatttgtggtttttataaaattagttggtttttataagagtgtata----gacaaaatatgatatatcatattttttttttggtagt 37193200  T
Q  103 gttgcaaagtaacgagacnnnnnnnnnnnnnnnnnngatggataggcaaaactaagattcaagcttatttctcagtatgagagattctatatcaggtgga 202  Q
    ||||||||||||||||||                  || ||||||||||||||||||||||||||||||| |||||||||||||||| || ||||| |||    
T  37193199 gttgcaaagtaacgagacaaaaagaaaaagaaaaaagacggataggcaaaactaagattcaagcttatttttcagtatgagagattccatgtcaggcgga 37193100  T
Q  203 tgtcacttccagcgagcagagcaccttgcatgttccatgtaaaacatctctaatatgaaggatgtaagt 271  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37193099 tgtcacttccagcgagcagagtaccttgcatgttccatgtaaaacatctctaatatgaaggatgtaagt 37193031  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 22540265 - 22540192
Alignment:
Q  162 caagcttatttctcagtatgagagattctatatcaggtggatgtcacttccagcgagcagagcaccttgcatgt 235  Q
    |||| |||| |||||| ||||||||||| |||||||| ||| | || ||||||||| |||||||||||| ||||    
T  22540265 caagtttatctctcaggatgagagattccatatcaggcggagggcaattccagcgaacagagcaccttgtatgt 22540192  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 44440480 - 44440451
Alignment:
Q  238 catgtaaaacatctctaatatgaaggatgt 267  Q
    ||||||||||||||||||||||||||||||    
T  44440480 catgtaaaacatctctaatatgaaggatgt 44440451  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 45036122 - 45036151
Alignment:
Q  238 catgtaaaacatctctaatatgaaggatgt 267  Q
    ||||||||||||||||||||||||||||||    
T  45036122 catgtaaaacatctctaatatgaaggatgt 45036151  T

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Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 54680 - 54753
Alignment:
Q  162 caagcttatttctcagtatgagagattctatatcaggtggatgtcacttccagcgagcagagcaccttgcatgt 235  Q
    ||||||||| ||| |  ||||||||||| || ||||||||| | || |||||| ||||||||||||||||||||    
T  54680 caagcttatctcttataatgagagattccatgtcaggtggaggacagttccagtgagcagagcaccttgcatgt 54753  T

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Target: scaffold0013; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 54827 - 54859
Alignment:
Q  235 ttccatgtaaaacatctctaatatgaaggatgt 267  Q
    |||||||||||||||||||||||||||||||||    
T  54827 ttccatgtaaaacatctctaatatgaaggatgt 54859  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 41940613 - 41940645
Alignment:
Q  235 ttccatgtaaaacatctctaatatgaaggatgt 267  Q
    |||||||||||||||||||||||||||||||||    
T  41940613 ttccatgtaaaacatctctaatatgaaggatgt 41940645  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 264
Target Start/End: Complemental strand, 25969800 - 25969771
Alignment:
Q  235 ttccatgtaaaacatctctaatatgaagga 264  Q
    ||||||||||||||||||||||||||||||    
T  25969800 ttccatgtaaaacatctctaatatgaagga 25969771  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 27184836 - 27184865
Alignment:
Q  238 catgtaaaacatctctaatatgaaggatgt 267  Q
    ||||||||||||||||||||||||||||||    
T  27184836 catgtaaaacatctctaatatgaaggatgt 27184865  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 9427783 - 9427751
Alignment:
Q  235 ttccatgtaaaacatctctaatatgaaggatgt 267  Q
    |||||||||||||||||||||||||||||||||    
T  9427783 ttccatgtaaaacatctctaatatgaaggatgt 9427751  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 3620947 - 3620979
Alignment:
Q  235 ttccatgtaaaacatctctaatatgaaggatgt 267  Q
    |||||||||||| ||||||||||||||||||||    
T  3620947 ttccatgtaaaatatctctaatatgaaggatgt 3620979  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 266
Target Start/End: Original strand, 5464626 - 5464657
Alignment:
Q  235 ttccatgtaaaacatctctaatatgaaggatg 266  Q
    ||||||||||||||||||||||||||||||||    
T  5464626 ttccatgtaaaacatctctaatatgaaggatg 5464657  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 266
Target Start/End: Original strand, 27046219 - 27046250
Alignment:
Q  235 ttccatgtaaaacatctctaatatgaaggatg 266  Q
    ||||||||||||||||||||||||||||||||    
T  27046219 ttccatgtaaaacatctctaatatgaaggatg 27046250  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 5464466 - 5464552
Alignment:
Q  149 caaaactaagattcaagcttatttctcagtatgagagattctatatcaggtggatgtcacttccagcgagcagagcaccttgcatgt 235  Q
    ||||| |||| ||||||||||| |||||| |||||||||||||| ||||  ||| | || || ||| || || ||||||||||||||    
T  5464466 caaaattaagtttcaagcttatctctcaggatgagagattctatgtcagacggagggcagtttcagtgaccaaagcaccttgcatgt 5464552  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 41029526 - 41029452
Alignment:
Q  161 tcaagcttatttctcagtatgagagattctatatcaggtggatgtcacttccagcgagcagagcaccttgcatgt 235  Q
    |||||||||||| |||  ||||||||||| || ||||||||| | || |||||  ||||||||||||||| ||||    
T  41029526 tcaagcttatttttcacgatgagagattccatgtcaggtggaggacagttccaatgagcagagcaccttgtatgt 41029452  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 12501725 - 12501692
Alignment:
Q  238 catgtaaaacatctctaatatgaaggatgtaagt 271  Q
    |||||||||| |||||||||||||||||||||||    
T  12501725 catgtaaaacgtctctaatatgaaggatgtaagt 12501692  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 27046072 - 27046145
Alignment:
Q  162 caagcttatttctcagtatgagagattctatatcaggtggatgtcacttccagcgagcagagcaccttgcatgt 235  Q
    ||||||||| ||  || ||||||||||  || ||||| ||||| || |||||| ||||||||||||||||||||    
T  27046072 caagcttatctcctaggatgagagatttcatgtcaggcggatgacagttccagtgagcagagcaccttgcatgt 27046145  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 15243537 - 15243508
Alignment:
Q  238 catgtaaaacatctctaatatgaaggatgt 267  Q
    ||||||||||||||||||||||||||||||    
T  15243537 catgtaaaacatctctaatatgaaggatgt 15243508  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 12607997 - 12607965
Alignment:
Q  235 ttccatgtaaaacatctctaatatgaaggatgt 267  Q
    ||||||||||| |||||||||||||||||||||    
T  12607997 ttccatgtaaaccatctctaatatgaaggatgt 12607965  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 2443374 - 2443345
Alignment:
Q  238 catgtaaaacatctctaatatgaaggatgt 267  Q
    ||||||||||||||||||||||||||||||    
T  2443374 catgtaaaacatctctaatatgaaggatgt 2443345  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 29047306 - 29047274
Alignment:
Q  235 ttccatgtaaaacatctctaatatgaaggatgt 267  Q
    ||||||||||| |||||||||||||||||||||    
T  29047306 ttccatgtaaagcatctctaatatgaaggatgt 29047274  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 17508772 - 17508743
Alignment:
Q  238 catgtaaaacatctctaatatgaaggatgt 267  Q
    ||||||||||||||||||||||||||||||    
T  17508772 catgtaaaacatctctaatatgaaggatgt 17508743  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 51160922 - 51160885
Alignment:
Q  235 ttccatgtaaaacatctctaatatgaaggatgtaagtg 272  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  51160922 ttccatataaaacatctctaatatgaaggatgtcagtg 51160885  T

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