View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_low_43 (Length: 279)
Name: NF14504_low_43
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_43 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 43 - 279
Target Start/End: Complemental strand, 31760014 - 31759777
Alignment:
| Q |
43 |
aacaacctcccttacattttcacttttaatttagatgattaatccataatcattagtgaagttagttttaataattagctttcctttaaaagtttgt-ag |
141 |
Q |
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| T |
31760014 |
aacaacctcccttacattttcacttttaatttagatgattaatccataatcattagtgaagttagtttaaataattagctttactttaaaagtttgttag |
31759915 |
T |
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| Q |
142 |
ttatttactaaatgacttgcactacaagttctgtgtatataaatagttgttaatcatctattttcattaatcaatgaaataacaaactctcaatactttg |
241 |
Q |
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| T |
31759914 |
ttatttactaaatgacttgcactacaagttatgtgtatataaatagttgttaatcatctattttcattaatcaatgaaataacaaactcttaatactttg |
31759815 |
T |
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| Q |
242 |
ttctctccataaccaccttctcattctctattcatctc |
279 |
Q |
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| T |
31759814 |
ttctctccatcaccactttctccttctctattcttctc |
31759777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 32635838 - 32635798
Alignment:
| Q |
73 |
ttagatgattaatccataatcattagtgaagttagttttaa |
113 |
Q |
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| T |
32635838 |
ttagatgattaatccacaatcattagtaaagttagttttaa |
32635798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 36019921 - 36019988
Alignment:
| Q |
156 |
acttgcactacaagttctgtgtatataaatagttgttaatcatctattttcattaatcaatgaaataa |
223 |
Q |
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| T |
36019921 |
acttgcactccaagttatgtgtatataaatagattgtactctcctaatttcattaatcaatgaaataa |
36019988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 226
Target Start/End: Original strand, 2799165 - 2799252
Alignment:
| Q |
139 |
tagttatttactaaatgacttgcactacaagttctgtgtatataaatagttgttaatcatctattttcattaatcaatgaaataacaa |
226 |
Q |
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| T |
2799165 |
tagttagttacctaataacttgcattacaagttaagtgtatataaattgattgtattgttctattttcattaatcaatgaaataacaa |
2799252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 29150104 - 29150050
Alignment:
| Q |
166 |
caagttctgtgtatataaatagttgttaatcatctattttcattaatcaatgaaa |
220 |
Q |
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| T |
29150104 |
caagttatgtgtatataaatagattgtactcttctattttcattaatcaatgaaa |
29150050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 37665289 - 37665339
Alignment:
| Q |
139 |
tagttatttactaaatgacttgcactacaagttctgtgtatataaatagtt |
189 |
Q |
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| T |
37665289 |
tagttacttactaaataacttgcactccaagttatgtgtatataagtagtt |
37665339 |
T |
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