View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_low_44 (Length: 279)
Name: NF14504_low_44
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_44 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 30956698 - 30956976
Alignment:
| Q |
1 |
caaggtcaatcacgtcacccatttaggagtttactgcctatgtcatgaaatcaccaaaatttgctcagctttatgttttttcaatgcaaagaatgaaata |
100 |
Q |
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| T |
30956698 |
caaggtcaatcacgtcacccatttaggagtttactgcctatgtcatgaaatcaccaaaatttgctcagctttatgttttttcaatgcaaagaatgaaata |
30956797 |
T |
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| Q |
101 |
caaaatagaatgcaaggttacaagtatatacagtcgacagaagttgttgcttttattgtgagagacataaataaaaatataattatgtaaactcaaagtg |
200 |
Q |
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| T |
30956798 |
caaaatagaatgcaaggttacaagtatatacagtcgacagaagttgttgcttttattgtgagagacataaataaaaatataattatgtaaactcaaagtg |
30956897 |
T |
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| Q |
201 |
gtaaacttcaatgaacagacgagtttcttgcaagatgtctacaagtggctcaaaacatgtgataaaatcactaatatga |
279 |
Q |
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| T |
30956898 |
gtaaacttcaatgaacagacgagtttcttgcaagatgtctacaagtggctcaaaacatgtgataaaatcactaatatga |
30956976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 243
Target Start/End: Original strand, 30946463 - 30946724
Alignment:
| Q |
2 |
aaggtcaatcacgtcacccatttaggagtttactgcctatgtcatgaaatcaccaaaatttgctcagctttatgttttttcaatgcaaagaatgaaatac |
101 |
Q |
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| T |
30946463 |
aaggtcaatcatgtcaaccagttaggagtttagtgcctatgtcatgacaaaaccaaaatttgctcag-tttacattta--caataccaagaatgaaatac |
30946559 |
T |
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| Q |
102 |
aaaatagaatgcaaggttacaagtatatacagtcgacag-------------aagttgttgcttttattgtgagagac-------ataaataaaaat--- |
178 |
Q |
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| T |
30946560 |
aaaatagaattaaaggttacaagcatatacggtcgacaatcaactgtatcaaaagttgttgcttttattgcaagagatgtagataatacataaaaattat |
30946659 |
T |
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| Q |
179 |
ataattatgtaaactcaaagtggtaaacttcaatgaacagacgagtttcttgcaagatgtctaca |
243 |
Q |
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| T |
30946660 |
ataattatgtaaactcaaagtggtaaacttcaaagaatagacaagtttcttgcaagatgtctaca |
30946724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 30931764 - 30931893
Alignment:
| Q |
1 |
caaggtcaatcacgtcacccatttaggagtttactgcctatgtcatga-aatcaccaaaatttgctcagctttatgttttttcaatgcaaagaatgaaat |
99 |
Q |
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| T |
30931764 |
caaggtaaatcatgtcatgcagttaggagtttgctgcctatgtctggacaatcgccaaaatttgctttgctttacattta--caatacatagaatgaaat |
30931861 |
T |
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| Q |
100 |
acaaaatagaatgcaaggttacaagtatatac |
131 |
Q |
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| T |
30931862 |
acaaaataagctgcaaggttacatgtatatac |
30931893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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