View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_low_45 (Length: 278)
Name: NF14504_low_45
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 29037562 - 29037773
Alignment:
| Q |
21 |
gaaggaccagaagctgtgacaccaccacctatttttagttattgtggaaagaatgaagctcttgacattgtctttcctgattggtcctattggggttggt |
120 |
Q |
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| T |
29037562 |
gaaggaccagaagctgtgacaccaccacctatttttagttattgtggaaagaatgaagctcttgacattgtctttcctgattggtcctattggggttggt |
29037661 |
T |
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| Q |
121 |
aagtctcctatattaaattactacttattaatgtggatttttggaatgttaataagtttaacaaggtggtatacacgattttgttgaagctttaaaatgt |
220 |
Q |
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| T |
29037662 |
aagtctcctatattaaattactacttattaatgtggatttttggaatgttaataagtttaacaaggtgctatacacgattttgttgaagcattaaaatgt |
29037761 |
T |
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| Q |
221 |
aaagtgatggcg |
232 |
Q |
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| T |
29037762 |
agcgtgatggcg |
29037773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 29017711 - 29017803
Alignment:
| Q |
34 |
ctgtgacaccaccacctatttttagttattgtggaaagaatgaagctcttgacattgtctttcctgattggtcctattggggttggtaagtct |
126 |
Q |
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| T |
29017711 |
ctgtgacactaccacctatttttagttattgtggacaaaatgatgctcttgatattgtctttcctgattggtccttttggggttggtaagtct |
29017803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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