View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14504_low_5 (Length: 491)

Name: NF14504_low_5
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14504_low_5
NF14504_low_5
[»] chr7 (37 HSPs)
chr7 (45-481)||(1710507-1710926)
chr7 (223-438)||(33894559-33894776)
chr7 (383-445)||(8427107-8427169)
chr7 (384-438)||(29363603-29363657)
chr7 (372-437)||(25014032-25014097)
chr7 (371-438)||(30751601-30751668)
chr7 (373-424)||(34754745-34754796)
chr7 (224-263)||(40009407-40009446)
chr7 (244-329)||(2999148-2999234)
chr7 (223-276)||(5276160-5276214)
chr7 (378-428)||(8094395-8094445)
chr7 (378-438)||(23214944-23215004)
chr7 (223-263)||(31341130-31341170)
chr7 (371-438)||(1418501-1418568)
chr7 (372-427)||(12242327-12242382)
chr7 (372-442)||(3836600-3836670)
chr7 (226-260)||(28613631-28613665)
chr7 (225-267)||(47134833-47134875)
chr7 (226-263)||(1423085-1423122)
chr7 (372-429)||(20547320-20547377)
chr7 (225-262)||(20553040-20553077)
chr7 (296-341)||(24363617-24363662)
chr7 (226-263)||(30133988-30134025)
chr7 (124-161)||(33871337-33871374)
chr7 (217-262)||(35808999-35809044)
chr7 (387-443)||(389936-389992)
chr7 (223-263)||(5373161-5373201)
chr7 (223-263)||(7513570-7513610)
chr7 (231-263)||(8445230-8445262)
chr7 (223-263)||(12234981-12235021)
chr7 (223-263)||(24973880-24973920)
chr7 (223-255)||(25670687-25670719)
chr7 (223-263)||(29574695-29574735)
chr7 (372-428)||(36598287-36598343)
chr7 (372-428)||(39542231-39542287)
chr7 (302-346)||(40428570-40428614)
chr7 (376-428)||(40734749-40734801)
[»] chr1 (53 HSPs)
chr1 (372-449)||(32515351-32515428)
chr1 (289-437)||(10199330-10199476)
chr1 (289-438)||(6292495-6292641)
chr1 (372-438)||(26400061-26400127)
chr1 (372-438)||(28467230-28467296)
chr1 (372-440)||(9507314-9507382)
chr1 (314-429)||(31517670-31517783)
chr1 (372-435)||(43420341-43420404)
chr1 (382-444)||(3215815-3215877)
chr1 (371-441)||(5157154-5157224)
chr1 (394-444)||(33527099-33527149)
chr1 (392-437)||(2832075-2832120)
chr1 (296-428)||(6279408-6279538)
chr1 (372-441)||(7252538-7252607)
chr1 (383-444)||(9602569-9602630)
chr1 (391-428)||(33975676-33975713)
chr1 (372-428)||(4363566-4363621)
chr1 (383-439)||(15581348-15581404)
chr1 (381-449)||(24460311-24460379)
chr1 (378-434)||(28837278-28837334)
chr1 (220-264)||(34619471-34619515)
chr1 (371-438)||(4549462-4549529)
chr1 (223-346)||(6231827-6231949)
chr1 (383-438)||(21002249-21002304)
chr1 (290-341)||(33722417-33722468)
chr1 (388-439)||(49282634-49282684)
chr1 (221-263)||(172275-172317)
chr1 (223-261)||(870981-871019)
chr1 (372-438)||(3319867-3319933)
chr1 (372-438)||(6659763-6659829)
chr1 (372-438)||(26866396-26866462)
chr1 (287-408)||(37811852-37811971)
chr1 (221-263)||(40304148-40304190)
chr1 (225-263)||(50319230-50319268)
chr1 (226-263)||(1232986-1233023)
chr1 (385-438)||(1565067-1565120)
chr1 (375-440)||(14559058-14559123)
chr1 (226-263)||(23895275-23895312)
chr1 (226-267)||(29794012-29794053)
chr1 (226-263)||(45145165-45145202)
chr1 (289-338)||(51929794-51929843)
chr1 (373-441)||(1662657-1662725)
chr1 (223-263)||(1730828-1730868)
chr1 (223-263)||(4549802-4549842)
chr1 (384-440)||(11893512-11893568)
chr1 (223-259)||(13037800-13037836)
chr1 (372-428)||(16980886-16980942)
chr1 (409-441)||(22416829-22416861)
chr1 (372-428)||(27807198-27807254)
chr1 (388-428)||(29793629-29793669)
chr1 (372-444)||(34668740-34668811)
chr1 (372-424)||(37272529-37272581)
chr1 (372-400)||(43371850-43371878)
[»] chr3 (42 HSPs)
chr3 (372-444)||(22667486-22667558)
chr3 (372-444)||(22724125-22724197)
chr3 (372-438)||(50211818-50211884)
chr3 (380-444)||(44014713-44014777)
chr3 (223-455)||(20192510-20192740)
chr3 (372-434)||(27795938-27796000)
chr3 (372-425)||(11041160-11041213)
chr3 (372-445)||(24158430-24158503)
chr3 (314-429)||(48588684-48588797)
chr3 (372-427)||(20210860-20210915)
chr3 (383-438)||(21872216-21872271)
chr3 (372-438)||(32663721-32663787)
chr3 (378-444)||(41057244-41057310)
chr3 (373-414)||(1810061-1810102)
chr3 (226-263)||(30669064-30669101)
chr3 (223-263)||(16790450-16790490)
chr3 (372-424)||(45590734-45590786)
chr3 (223-263)||(52413215-52413255)
chr3 (373-444)||(5407369-5407440)
chr3 (224-259)||(8007793-8007828)
chr3 (274-400)||(14548680-14548804)
chr3 (289-435)||(41644369-41644513)
chr3 (224-263)||(49465757-49465796)
chr3 (372-438)||(2413600-2413666)
chr3 (231-344)||(24887296-24887409)
chr3 (229-263)||(25964384-25964418)
chr3 (226-263)||(2128345-2128382)
chr3 (226-263)||(8142804-8142841)
chr3 (375-440)||(27294432-27294497)
chr3 (281-438)||(30321939-30322096)
chr3 (230-338)||(34254827-34254936)
chr3 (377-438)||(49605772-49605833)
chr3 (227-263)||(1395611-1395647)
chr3 (373-441)||(1395723-1395791)
chr3 (223-263)||(3757984-3758024)
chr3 (372-436)||(33880480-33880544)
chr3 (226-341)||(38462220-38462335)
chr3 (223-263)||(41028945-41028985)
chr3 (231-263)||(42808923-42808955)
chr3 (290-346)||(48528559-48528615)
chr3 (223-263)||(49546581-49546621)
chr3 (372-444)||(50015969-50016041)
[»] chr8 (37 HSPs)
chr8 (374-444)||(9700086-9700156)
chr8 (380-444)||(16162851-16162915)
chr8 (371-446)||(43393685-43393760)
chr8 (372-428)||(1664452-1664508)
chr8 (223-342)||(11795028-11795147)
chr8 (223-341)||(28769355-28769473)
chr8 (372-438)||(2487929-2487995)
chr8 (372-438)||(6496812-6496878)
chr8 (223-341)||(11188171-11188289)
chr8 (372-438)||(33553323-33553389)
chr8 (385-438)||(10488559-10488612)
chr8 (372-425)||(24326114-24326167)
chr8 (224-276)||(10383767-10383819)
chr8 (374-438)||(14926903-14926967)
chr8 (289-341)||(30277261-30277313)
chr8 (372-427)||(7918713-7918768)
chr8 (274-428)||(11415141-11415293)
chr8 (224-263)||(26215433-26215472)
chr8 (275-341)||(8062317-8062383)
chr8 (375-437)||(8629199-8629261)
chr8 (372-438)||(10062062-10062128)
chr8 (223-265)||(10114426-10114468)
chr8 (225-263)||(42597339-42597377)
chr8 (385-443)||(44236739-44236797)
chr8 (223-264)||(1112789-1112830)
chr8 (409-438)||(9130240-9130269)
chr8 (372-425)||(21130695-21130748)
chr8 (411-444)||(43717849-43717882)
chr8 (378-438)||(2606138-2606198)
chr8 (231-259)||(6950266-6950294)
chr8 (372-444)||(10075468-10075540)
chr8 (274-334)||(10075574-10075634)
chr8 (223-263)||(14482138-14482178)
chr8 (390-438)||(18331815-18331863)
chr8 (372-444)||(30191056-30191128)
chr8 (383-427)||(31884872-31884916)
chr8 (410-446)||(43393625-43393661)
[»] chr5 (45 HSPs)
chr5 (221-341)||(16889669-16889789)
chr5 (371-438)||(25720338-25720405)
chr5 (379-441)||(10771806-10771868)
chr5 (372-444)||(7550433-7550505)
chr5 (372-428)||(8090019-8090075)
chr5 (223-267)||(10391289-10391333)
chr5 (375-423)||(34975450-34975498)
chr5 (394-441)||(11615572-11615619)
chr5 (383-446)||(40335786-40335849)
chr5 (371-428)||(4855777-4855834)
chr5 (373-438)||(39257315-39257380)
chr5 (223-263)||(7096221-7096261)
chr5 (372-428)||(12407661-12407717)
chr5 (223-263)||(13224365-13224405)
chr5 (235-342)||(14295454-14295561)
chr5 (225-341)||(18704052-18704167)
chr5 (228-339)||(36638687-36638799)
chr5 (296-427)||(37611147-37611276)
chr5 (296-427)||(37787877-37788006)
chr5 (223-263)||(40048374-40048414)
chr5 (226-265)||(12460092-12460131)
chr5 (220-263)||(19113211-19113254)
chr5 (382-445)||(42034153-42034216)
chr5 (390-448)||(25705570-25705628)
chr5 (226-263)||(12407755-12407792)
chr5 (371-428)||(14980591-14980648)
chr5 (374-423)||(17259302-17259351)
chr5 (373-442)||(31723889-31723958)
chr5 (372-428)||(1084070-1084126)
chr5 (225-261)||(1773521-1773557)
chr5 (408-444)||(6938648-6938684)
chr5 (410-442)||(7674768-7674800)
chr5 (231-263)||(11615452-11615484)
chr5 (374-422)||(13781812-13781860)
chr5 (372-444)||(14599287-14599359)
chr5 (390-442)||(14706201-14706253)
chr5 (223-263)||(20982229-20982269)
chr5 (372-428)||(21782587-21782643)
chr5 (223-263)||(26516234-26516274)
chr5 (223-263)||(29588816-29588856)
chr5 (372-428)||(32849261-32849317)
chr5 (223-263)||(37063168-37063208)
chr5 (274-342)||(37588375-37588443)
chr5 (372-424)||(37968960-37969012)
chr5 (223-263)||(39128575-39128615)
[»] chr4 (42 HSPs)
chr4 (372-447)||(2996656-2996731)
chr4 (372-443)||(27123268-27123339)
chr4 (372-426)||(18628486-18628540)
chr4 (274-397)||(8074750-8074871)
chr4 (380-427)||(4691939-4691986)
chr4 (372-438)||(19429391-19429457)
chr4 (223-400)||(30207530-30207704)
chr4 (371-440)||(25896866-25896935)
chr4 (372-437)||(46860001-46860066)
chr4 (214-263)||(50745928-50745976)
chr4 (50-114)||(1312860-1312924)
chr4 (219-263)||(5131326-5131370)
chr4 (223-263)||(8422931-8422971)
chr4 (374-434)||(18512440-18512500)
chr4 (223-263)||(51555961-51556001)
chr4 (372-427)||(4071961-4072016)
chr4 (409-448)||(17822776-17822815)
chr4 (373-436)||(21157852-21157915)
chr4 (223-262)||(40709475-40709514)
chr4 (274-341)||(43824270-43824337)
chr4 (383-437)||(1017122-1017176)
chr4 (225-263)||(6364087-6364125)
chr4 (221-263)||(17125724-17125766)
chr4 (373-447)||(17975249-17975323)
chr4 (408-442)||(22845623-22845657)
chr4 (223-261)||(47970254-47970292)
chr4 (388-438)||(56186819-56186869)
chr4 (373-438)||(2977897-2977962)
chr4 (223-260)||(4191675-4191712)
chr4 (411-444)||(19394864-19394897)
chr4 (388-441)||(32420976-32421029)
chr4 (222-263)||(44138494-44138535)
chr4 (411-448)||(45104307-45104344)
chr4 (226-263)||(51044553-51044590)
chr4 (375-424)||(56007765-56007814)
chr4 (223-263)||(4471107-4471147)
chr4 (223-263)||(4798653-4798693)
chr4 (223-263)||(25487639-25487679)
chr4 (223-263)||(28623225-28623265)
chr4 (223-263)||(32066503-32066543)
chr4 (372-428)||(33534100-33534156)
chr4 (383-427)||(50298609-50298653)
[»] chr2 (46 HSPs)
chr2 (378-450)||(28803439-28803511)
chr2 (372-438)||(11513979-11514045)
chr2 (223-326)||(10143108-10143211)
chr2 (383-438)||(41170704-41170759)
chr2 (388-438)||(11063292-11063342)
chr2 (372-438)||(22878181-22878247)
chr2 (372-446)||(37474848-37474921)
chr2 (321-438)||(43456628-43456743)
chr2 (226-263)||(5045251-5045288)
chr2 (222-263)||(5133707-5133748)
chr2 (373-426)||(13866962-13867015)
chr2 (223-263)||(18962132-18962172)
chr2 (220-263)||(5998796-5998839)
chr2 (372-447)||(6547972-6548047)
chr2 (383-446)||(15370236-15370299)
chr2 (224-263)||(32821746-32821785)
chr2 (383-438)||(40944007-40944062)
chr2 (274-341)||(41817155-41817222)
chr2 (223-262)||(44443256-44443295)
chr2 (373-447)||(3078520-3078594)
chr2 (372-438)||(4350773-4350839)
chr2 (387-429)||(25609894-25609936)
chr2 (386-436)||(33981220-33981270)
chr2 (387-441)||(40158816-40158870)
chr2 (225-262)||(8820368-8820405)
chr2 (371-428)||(9996820-9996877)
chr2 (405-438)||(30990360-30990393)
chr2 (371-448)||(32364642-32364719)
chr2 (223-260)||(41033047-41033084)
chr2 (383-440)||(42852621-42852678)
chr2 (226-263)||(44606182-44606219)
chr2 (302-342)||(1647251-1647291)
chr2 (223-263)||(3102629-3102669)
chr2 (223-263)||(4026753-4026793)
chr2 (379-443)||(5045084-5045148)
chr2 (372-428)||(9478382-9478438)
chr2 (223-263)||(10190215-10190255)
chr2 (225-261)||(23747242-23747278)
chr2 (223-263)||(25609732-25609772)
chr2 (223-263)||(28902013-28902053)
chr2 (223-263)||(30990463-30990503)
chr2 (223-263)||(32098402-32098442)
chr2 (226-341)||(32694151-32694266)
chr2 (223-263)||(34054995-34055035)
chr2 (388-444)||(40759259-40759315)
chr2 (372-428)||(43141955-43142011)
[»] chr6 (37 HSPs)
chr6 (372-443)||(2460067-2460138)
chr6 (378-438)||(35070388-35070448)
chr6 (223-262)||(33416321-33416360)
chr6 (371-441)||(24973945-24974015)
chr6 (302-418)||(34538159-34538273)
chr6 (371-427)||(8420129-8420185)
chr6 (388-444)||(12111066-12111122)
chr6 (227-263)||(20370839-20370875)
chr6 (223-259)||(33259752-33259788)
chr6 (231-341)||(281864-281974)
chr6 (371-438)||(1432221-1432288)
chr6 (389-428)||(9667916-9667955)
chr6 (372-438)||(27894116-27894182)
chr6 (383-444)||(2457035-2457096)
chr6 (224-261)||(3171527-3171564)
chr6 (223-339)||(4006650-4006766)
chr6 (223-260)||(4247731-4247768)
chr6 (374-415)||(10353705-10353746)
chr6 (302-339)||(29957940-29957977)
chr6 (223-260)||(31461614-31461651)
chr6 (224-265)||(31624195-31624236)
chr6 (372-445)||(32171297-32171370)
chr6 (223-263)||(2034533-2034572)
chr6 (223-263)||(2514638-2514678)
chr6 (223-259)||(2727954-2727990)
chr6 (369-425)||(3155255-3155311)
chr6 (384-428)||(3738196-3738240)
chr6 (388-428)||(6742910-6742950)
chr6 (223-263)||(10452454-10452494)
chr6 (416-444)||(12811391-12811419)
chr6 (223-263)||(28621204-28621244)
chr6 (223-263)||(29274323-29274363)
chr6 (223-263)||(29940732-29940772)
chr6 (372-428)||(30865566-30865622)
chr6 (372-428)||(32917280-32917336)
chr6 (364-400)||(32997591-32997627)
chr6 (223-263)||(33068655-33068695)
[»] scaffold0199 (1 HSPs)
scaffold0199 (372-428)||(6893-6949)
[»] scaffold0110 (2 HSPs)
scaffold0110 (223-258)||(35895-35930)
scaffold0110 (372-416)||(35775-35819)
[»] scaffold0050 (1 HSPs)
scaffold0050 (412-450)||(58865-58903)
[»] scaffold0141 (1 HSPs)
scaffold0141 (376-445)||(9692-9761)
[»] scaffold0590 (1 HSPs)
scaffold0590 (223-263)||(1168-1208)
[»] scaffold0275 (1 HSPs)
scaffold0275 (223-263)||(2767-2807)
[»] scaffold0020 (1 HSPs)
scaffold0020 (392-444)||(159888-159940)
[»] scaffold0428 (1 HSPs)
scaffold0428 (223-259)||(3840-3876)
[»] scaffold0060 (1 HSPs)
scaffold0060 (231-263)||(63379-63411)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 45 - 481
Target Start/End: Original strand, 1710507 - 1710926
Alignment:
Q  45 tatagctattttggagactttatggaaatgagctggaaacagt--atatggatatgttataacttgttttcggttaatcggaatagtattgcaagtgttt 142  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  1710507 tatagctattttggagactttatggaaatgagctggaaacagtttatatggatatgttataacttgttttcggttattcggaatagtattgtaagtgttt 1710606  T
Q  143 atgtaagtagataagctcagttattaaggctctgcttggataaacaaaattaatggcttataacataagtgatgataaattgcttatgtataagctgttt 242  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||| ||||||||||    
T  1710607 atgtaagtagataagctcaattattaaggctctgcttggataaacaaaattaatggcttattacattagtgctgataaattgcttatgtctaagctgttt 1710706  T
Q  243 ttataacaaaagataaaataagtcagaccgttttttatataaggtgtaagcttttttcgtaagctattctagagaggttatggaaattagctgaaaacag 342  Q
    ||||||| ||||||||||||| | | |||| ||||||||                    |||||||||||||||||||||||||||| ||||||||||||    
T  1710707 ttataacgaaagataaaataaattataccg-tttttata--------------------taagctattctagagaggttatggaaataagctgaaaacag 1710785  T
Q  343 tttacgaagatgttgtgagctgtttttatataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatc-----caa 437  Q
    |||| | ||||||||| |||||||||    ||| || | ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||     |||    
T  1710786 tttatggagatgttgtaagctgtttt--cttaaact-tttcaaacagtgtcacaagggattatgttagtagataagctcaaataagctaatctaattcaa 1710882  T
Q  438 ataggccttaaatagagatatttgtataaactgaagtattatct 481  Q
    ||| |||||||| ||||||||||||||||| |||||||| ||||    
T  1710883 ataagccttaaacagagatatttgtataaaatgaagtatcatct 1710926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 223 - 438
Target Start/End: Original strand, 33894559 - 33894776
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataagtcagaccgttttttatataaggtgtaagctttttt-----cgtaagctattctagaga 317  Q
    |||||||||||||||| ||| |||||||||||||||||||||||| || |||||  ||||||| | || | | ||||     | |||||||| || || |    
T  33894559 tgcttatgtataagctatttctataacaaaagataaaataagtcaaactgttttc-atataagctttatgttgtttttacaacttaagctatcctggaaa 33894657  T
Q  318 ggttatggaaattagctgaaaacagtttacgaagatgttgtgagctgtttttatataagctctctcaaacagtctcacaagtgattgtgttagtagataa 417  Q
    | |||| ||||| |||||||||||  ||| | | ||||  |  |||||||| |||  ||||||| |||||||||||||||||| || ||| | | |||||    
T  33894658 gtttattgaaataagctgaaaacaacttatggacatgtcatatgctgttttcata--agctctcacaaacagtctcacaagtgcttatgtcatttgataa 33894755  T
Q  418 gctcaaataagctaatccaaa 438  Q
    |||||||||||||||||||||    
T  33894756 gctcaaataagctaatccaaa 33894776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 383 - 445
Target Start/End: Original strand, 8427107 - 8427169
Alignment:
Q  383 caaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcct 445  Q
    |||||||||||||||||  || |||||||||||||||||||||||   |||||||||||||||    
T  8427107 caaacagtctcacaagtacttatgttagtagataagctcaaataaatcaatccaaataggcct 8427169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 384 - 438
Target Start/End: Original strand, 29363603 - 29363657
Alignment:
Q  384 aaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    ||||||||||||||||| || |||||||||||||| |||||||||| ||||||||    
T  29363603 aaacagtctcacaagtgcttatgttagtagataagttcaaataagccaatccaaa 29363657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 437
Target Start/End: Original strand, 25014032 - 25014097
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaa 437  Q
    |||| |||||||||||||||| ||||||| |||||| |||||||||  |||||||| |||||||||    
T  25014032 ataaactctctcaaacagtcttacaagtgcttgtgtcagtagataaattcaaataaactaatccaa 25014097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 371 - 438
Target Start/End: Original strand, 30751601 - 30751668
Alignment:
Q  371 tataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    ||||||||||| ||||||||| |||||||| || ||| |||||||||| | ||||||| |||||||||    
T  30751601 tataagctctcccaaacagtcgcacaagtgcttatgtcagtagataagtttaaataagttaatccaaa 30751668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 424
Target Start/End: Complemental strand, 34754796 - 34754745
Alignment:
Q  373 taagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaa 424  Q
    |||||||||||||||||||||| ||||| |||||| | ||||||||||||||    
T  34754796 taagctctctcaaacagtctcataagtgtttgtgtcaatagataagctcaaa 34754745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 40009407 - 40009446
Alignment:
Q  224 gcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  40009407 gcttatgtataagctgtttttataacaaaagacaaaataa 40009446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 329
Target Start/End: Original strand, 2999148 - 2999234
Alignment:
Q  244 tataacaaaagataaaataa-gtcagaccgttttttatataaggtgtaagcttttttcgtaagctattctagagaggttatggaaat 329  Q
    |||||||||||||||||||| |||| ||||||||| ||||||| |||||| | |||   |||||||||||| |||  ||||||||||    
T  2999148 tataacaaaagataaaataaagtcaaaccgtttttcatataagatgtaagttgtttctttaagctattctaaagatcttatggaaat 2999234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 5276160 - 5276214
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaat-aagtcagaccgtttt 276  Q
    |||||||||||||||| ||||||||||||||||||| || |||||| ||||||||    
T  5276160 tgcttatgtataagctatttttataacaaaagataacataaagtcaaaccgtttt 5276214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 428
Target Start/End: Original strand, 8094395 - 8094445
Alignment:
Q  378 tctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    ||||||||| ||||||||||||| || || |||||||||||||||||||||    
T  8094395 tctctcaaatagtctcacaagtgcttatgctagtagataagctcaaataag 8094445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 23214944 - 23215004
Alignment:
Q  378 tctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    ||||||||||||||||| ||||| || || ||||||||||| |||||||||  ||||||||    
T  23214944 tctctcaaacagtctcataagtgtttatgctagtagataaggtcaaataagtcaatccaaa 23215004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 31341130 - 31341170
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  31341130 tgcttatgtataagctatttgtataacaaaagataaaataa 31341170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 438
Target Start/End: Original strand, 1418501 - 1418568
Alignment:
Q  371 tataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    ||||||||||| ||||||| |||| ||||| || ||  ||||||||||||||||||||  ||||||||    
T  1418501 tataagctctcacaaacagcctcataagtgcttatgccagtagataagctcaaataagtcaatccaaa 1418568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 427
Target Start/End: Original strand, 12242327 - 12242382
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataa 427  Q
    ||||||||||||||||||||||||||| | || ||| ||||||| | |||||||||    
T  12242327 ataagctctctcaaacagtctcacaagaggttatgtcagtagatcacctcaaataa 12242382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 442
Target Start/End: Complemental strand, 3836670 - 3836600
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaatagg 442  Q
    ||||| |||| |||||||| ||||||||| ||  |  ||||||||||||||||||||  ||||||||||||    
T  3836670 ataagttctcccaaacagtttcacaagtgcttaagccagtagataagctcaaataaggcaatccaaatagg 3836600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 260
Target Start/End: Complemental strand, 28613665 - 28613631
Alignment:
Q  226 ttatgtataagctgtttttataacaaaagataaaa 260  Q
    ||||||||||||| |||||||||||||||||||||    
T  28613665 ttatgtataagctatttttataacaaaagataaaa 28613631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 47134875 - 47134833
Alignment:
Q  225 cttatgtataagctgtttttataacaaaagataaaataagtca 267  Q
    ||||| |||||||| |||||||||| |||||||||||||||||    
T  47134875 cttatctataagctatttttataaccaaagataaaataagtca 47134833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 1423085 - 1423122
Alignment:
Q  226 ttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  1423085 ttatgtataagctattttcataacaaaagataaaataa 1423122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 429
Target Start/End: Complemental strand, 20547377 - 20547320
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagc 429  Q
    ||||||||||||||||||| ||||||||| || ||| | ||||||| || ||||||||    
T  20547377 ataagctctctcaaacagtatcacaagtgtttatgtcattagataaactaaaataagc 20547320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 20553040 - 20553077
Alignment:
Q  225 cttatgtataagctgtttttataacaaaagataaaata 262  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  20553040 cttacgtataagctgtttttataacaaaaaataaaata 20553077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 341
Target Start/End: Complemental strand, 24363662 - 24363617
Alignment:
Q  296 ttttcgtaagctattctagagaggttatggaaattagctgaaaaca 341  Q
    ||||| |||||||| || |||||||||||||||| |||||||||||    
T  24363662 ttttcataagctatcctggagaggttatggaaataagctgaaaaca 24363617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 30133988 - 30134025
Alignment:
Q  226 ttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  30133988 ttatgtataagctatttttacaacaaaagataaaataa 30134025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 33871337 - 33871374
Alignment:
Q  124 aatagtattgcaagtgtttatgtaagtagataagctca 161  Q
    |||||| | |||||||||||||||||||||||||||||    
T  33871337 aatagtttcgcaagtgtttatgtaagtagataagctca 33871374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 35809044 - 35808999
Alignment:
Q  217 ataaattgcttatgtataagctgtttttataacaaaagataaaata 262  Q
    ||||| || ||||||||||||| ||| |||||||||||||||||||    
T  35809044 ataaagtgtttatgtataagctatttctataacaaaagataaaata 35808999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 443
Target Start/End: Original strand, 389936 - 389992
Alignment:
Q  387 cagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggc 443  Q
    |||||||||||||  || ||  |||||||| |||||||||||| |||||||||||||    
T  389936 cagtctcacaagtacttatggaagtagataggctcaaataagccaatccaaataggc 389992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 5373161 - 5373201
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||| ||| ||| ||||||||||||||||||||    
T  5373161 tgcttatgtatatgctatttctataacaaaagataaaataa 5373201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 7513570 - 7513610
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||||||  ||||||||||||||||    
T  7513570 tgcttatgtataagctatttttaagacaaaagataaaataa 7513610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 8445230 - 8445262
Alignment:
Q  231 tataagctgtttttataacaaaagataaaataa 263  Q
    |||||||| ||||||||||||||||||||||||    
T  8445230 tataagctatttttataacaaaagataaaataa 8445262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 12235021 - 12234981
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||||| | ||| ||||||||||||||||    
T  12235021 tgcttatgtataagctgtatgtatgacaaaagataaaataa 12234981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 24973880 - 24973920
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||| ||||| ||| ||||||||||||||||||||    
T  24973880 tgcttatgtaaaagctatttctataacaaaagataaaataa 24973920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 25670719 - 25670687
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaaga 255  Q
    |||||||||||||||| ||||||||||||||||    
T  25670719 tgcttatgtataagctatttttataacaaaaga 25670687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 29574735 - 29574695
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||||||| ||||||||| ||||||    
T  29574735 tgcttatgtataagctatttttatgacaaaagatgaaataa 29574695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 428
Target Start/End: Complemental strand, 36598343 - 36598287
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    ||||||||||||||||| |||||||| || || ||| ||||| |||| |||||||||    
T  36598343 ataagctctctcaaacaatctcacaattgcttatgtcagtagttaagttcaaataag 36598287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 428
Target Start/End: Complemental strand, 39542287 - 39542231
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    ||||||||||| |||| ||||| |||||| || || |||||||||| ||||||||||    
T  39542287 ataagctctctaaaactgtctcgcaagtgcttatgctagtagataaactcaaataag 39542231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 40428570 - 40428614
Alignment:
Q  302 taagctattctagagaggttatggaaattagctgaaaacagttta 346  Q
    |||||||| ||| |||| |||||||||| ||||||||||||||||    
T  40428570 taagctatcctaaagagcttatggaaataagctgaaaacagttta 40428614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 428
Target Start/End: Complemental strand, 40734801 - 40734749
Alignment:
Q  376 gctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    ||||||||||||| ||||||||||  || | ||||||||||||||||| ||||    
T  40734801 gctctctcaaacaatctcacaagtatttatattagtagataagctcaagtaag 40734749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 53)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 449
Target Start/End: Complemental strand, 32515428 - 32515351
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggccttaaa 449  Q
    |||||||||| |||||||||||||||||| || ||||||||||||| |||||||| ||||||||||| ||||| ||||    
T  32515428 ataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaatatgctaatccaaacaggccataaa 32515351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 289 - 437
Target Start/End: Complemental strand, 10199476 - 10199330
Alignment:
Q  289 taagcttttttcgtaagctattctagagaggttatggaaattagctgaaaacagtttacgaagatgttgtgagctgtttttatataagctctctcaaaca 388  Q
    |||||||||||| ||||||||| ||||||| ||||| |||| |||||||||||  ||| ||| ||||  | |||| ||||   || || |||| |||| |    
T  10199476 taagcttttttcataagctattttagagagcttatgaaaataagctgaaaacaacttatgaacatgtcataagctatttt--catgagttctcccaaata 10199379  T
Q  389 gtctcacaagtgattgtgttagtagataagctcaaataagctaatccaa 437  Q
    || ||||||||| || ||||||||||||||||||||||||  |||||||    
T  10199378 gtgtcacaagtgcttatgttagtagataagctcaaataagtcaatccaa 10199330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 438
Target Start/End: Original strand, 6292495 - 6292641
Alignment:
Q  289 taagcttttttcgtaagctattctagagaggttatggaaattagctgaaaacagtttacgaagatgttgtgagctgtttttatataagctctctcaaaca 388  Q
    |||||| ||||||||| ||||| | ||||| ||||| |||| |||||||||||| ||| ||| ||||  | ||||||||| |   ||  |||| ||||||    
T  6292495 taagctattttcgtaaactattttggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctgttttaa---aaattctcccaaaca 6292591  T
Q  389 gtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
     ||||| ||||| || ||| ||||||||||||||||||||  ||||||||    
T  6292592 atctcaaaagtgcttatgtcagtagataagctcaaataagtcaatccaaa 6292641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 438
Target Start/End: Original strand, 26400061 - 26400127
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    ||||||||||||||||| |||||||||| ||| || ||||| |||| ||||||||||| ||||||||    
T  26400061 ataagctctctcaaacaatctcacaagttattatgctagtatataatctcaaataagcaaatccaaa 26400127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 28467296 - 28467230
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    |||||||||| |||||||| ||||||||| |||||| | |||||||||||||| |||| ||||||||    
T  28467296 ataagctctcccaaacagtttcacaagtgtttgtgtcaatagataagctcaaacaagccaatccaaa 28467230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 9507314 - 9507382
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaata 440  Q
    |||||||||| ||||||||||||||| ||  | || |||||||||||||||||||||| ||| ||||||    
T  9507314 ataagctctcccaaacagtctcacaaatgcctatgctagtagataagctcaaataagcaaattcaaata 9507382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 429
Target Start/End: Complemental strand, 31517783 - 31517670
Alignment:
Q  314 gagaggttatggaaattagctgaaaacagtttacgaagatgttgtgagctgtttttatataagctctctcaaacagtctcacaagtgattgtgttagtag 413  Q
    ||||| ||||| |||| |||||||||||| ||| ||| ||||  |||| |||||| |||  || |||| |||||||||||||||||| || ||  ||||     
T  31517783 gagagcttatgaaaataagctgaaaacagcttatgaacatgtcatgagttgttttgata--agttctcccaaacagtctcacaagtgcttatgccagtaa 31517686  T
Q  414 ataagctcaaataagc 429  Q
    ||||||||||||||||    
T  31517685 ataagctcaaataagc 31517670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 435
Target Start/End: Original strand, 43420341 - 43420404
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatcc 435  Q
    ||||| |||| ||| |||||||||||||| || |||  ||||||||||||||||||||||||||    
T  43420341 ataagatctcacaagcagtctcacaagtgtttatgtctgtagataagctcaaataagctaatcc 43420404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 444
Target Start/End: Original strand, 3215815 - 3215877
Alignment:
Q  382 tcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcc 444  Q
    |||||||||||||||| || || ||||| || |||| |||||||||| |||||||||||||||    
T  3215815 tcaaacagtctcacaaatgcttatgttaataaataaactcaaataagataatccaaataggcc 3215877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 441
Target Start/End: Original strand, 5157154 - 5157224
Alignment:
Q  371 tataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaatag 441  Q
    ||||||||||| |||||||| ||||||||| || |||  ||||||||| |||||||||  |||||||||||    
T  5157154 tataagctctcccaaacagtttcacaagtgtttatgtccgtagataagttcaaataagtcaatccaaatag 5157224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 444
Target Start/End: Complemental strand, 33527149 - 33527099
Alignment:
Q  394 acaagtgattgtgttagtagataagctcaaataagctaatccaaataggcc 444  Q
    ||||||| ||||||||| ||||||||||||||||| |||||||||| ||||    
T  33527149 acaagtgcttgtgttagcagataagctcaaataaggtaatccaaattggcc 33527099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 437
Target Start/End: Original strand, 2832075 - 2832120
Alignment:
Q  392 tcacaagtgattgtgttagtagataagctcaaataagctaatccaa 437  Q
    ||||||||| || || ||||||||||||||||||||||||||||||    
T  2832075 tcacaagtgcttatgctagtagataagctcaaataagctaatccaa 2832120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 296 - 428
Target Start/End: Original strand, 6279408 - 6279538
Alignment:
Q  296 ttttcgtaagctattctagagaggttatggaaattagctgaaaacagtttacgaagatgttgtgagctgtttttatataagctctctcaaacagtctcac 395  Q
    ||||| |||||||| |||||||| ||||||||||  ||||||||||  ||| | | |||| || | ||||||  |||  ||||||||||||||| | |||    
T  6279408 ttttcataagctatcctagagagcttatggaaatacgctgaaaacaacttatggacatgtggttaactgtttccata--agctctctcaaacagccacac 6279505  T
Q  396 aagtgattgtgttagtagataagctcaaataag 428  Q
    ||||| || ||| ||||| |||||| |||||||    
T  6279506 aagtgcttatgtcagtagttaagctgaaataag 6279538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 372 - 441
Target Start/End: Complemental strand, 7252607 - 7252538
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaatag 441  Q
    ||||| |||| |||||||| || |||||  || ||||||||||| ||||||||||||||||| |||||||    
T  7252607 ataagttctcccaaacagtttctcaagtacttatgttagtagattagctcaaataagctaattcaaatag 7252538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 444
Target Start/End: Complemental strand, 9602630 - 9602569
Alignment:
Q  383 caaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcc 444  Q
    |||| ||||||||||||| ||  ||||||||||||||||| |||||  ||||||||||||||    
T  9602630 caaatagtctcacaagtgcttaagttagtagataagctcagataagtcaatccaaataggcc 9602569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 428
Target Start/End: Original strand, 33975676 - 33975713
Alignment:
Q  391 ctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    |||||||||| |||||||||||||||||||||||||||    
T  33975676 ctcacaagtgcttgtgttagtagataagctcaaataag 33975713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 428
Target Start/End: Complemental strand, 4363621 - 4363566
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    |||||| |||||||||| |||||||||| ||| ||| ||||||||||||||||||||    
T  4363621 ataagcgctctcaaacaatctcacaagt-attatgtaagtagataagctcaaataag 4363566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 439
Target Start/End: Original strand, 15581348 - 15581404
Alignment:
Q  383 caaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaat 439  Q
    |||||| ||||||||||| || ||| |||||||||||| |||||||||| |||||||    
T  15581348 caaacaatctcacaagtgcttatgtcagtagataagctaaaataagctattccaaat 15581404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 449
Target Start/End: Complemental strand, 24460379 - 24460311
Alignment:
Q  381 ctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggccttaaa 449  Q
    |||||||||||||||||||| |  ||| |||||||||| |||||||||  |||||||| ||||| ||||    
T  24460379 ctcaaacagtctcacaagtgctcatgtcagtagataagttcaaataagtcaatccaaacaggccctaaa 24460311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 28837334 - 28837278
Alignment:
Q  378 tctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatc 434  Q
    ||||| |||||||||| |||||| || ||| ||||||||||||||||||||| ||||    
T  28837334 tctcttaaacagtctctcaagtgcttatgtcagtagataagctcaaataagccaatc 28837278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 34619515 - 34619471
Alignment:
Q  220 aattgcttatgtataagctgtttttataacaaaagataaaataag 264  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||    
T  34619515 aattgcttatgtataagccatttctataacaaaagataaaataag 34619471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 438
Target Start/End: Complemental strand, 4549529 - 4549462
Alignment:
Q  371 tataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    ||||||||||| |||||||||||| || || || ||  ||||||||| ||||||||||| ||||||||    
T  4549529 tataagctctcccaaacagtctcagaaatgcttatgccagtagataatctcaaataagccaatccaaa 4549462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 346
Target Start/End: Complemental strand, 6231949 - 6231827
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataagtcagaccgttttttatataaggtgtaagcttttttcgtaagctattctagagaggtta 322  Q
    ||||||||||| || | |||||||||| || ||||||  |||||| || |||||| ||||||  | |||||| |||||||||||||  ||  |||  |||    
T  6231949 tgcttatgtattaggtctttttataaccaa-gataaataaagtcaaactgtttttcatataatctataagctgttttcgtaagctaacctgaagaactta 6231851  T
Q  323 tggaaattagctgaaaacagttta 346  Q
    | ||||| ||||||||||||||||    
T  6231850 tagaaataagctgaaaacagttta 6231827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 438
Target Start/End: Original strand, 21002249 - 21002304
Alignment:
Q  383 caaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    |||||||||||||||||  || ||  ||||||||||||||||||||| ||||||||    
T  21002249 caaacagtctcacaagttcttatgcaagtagataagctcaaataagccaatccaaa 21002304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 33722468 - 33722417
Alignment:
Q  290 aagcttttttcgtaagctattctagagaggttatggaaattagctgaaaaca 341  Q
    ||||||||||| |||| ||| ||| ||||||||||||||| |||||||||||    
T  33722468 aagcttttttcataagttatcctacagaggttatggaaataagctgaaaaca 33722417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 439
Target Start/End: Complemental strand, 49282684 - 49282634
Alignment:
Q  388 agtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaat 439  Q
    ||||||||||||| || |||||||||| || |||||||||||||||||||||    
T  49282684 agtctcacaagtgtttatgttagtagacaa-ctcaaataagctaatccaaat 49282634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 172275 - 172317
Alignment:
Q  221 attgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||||| ||| |||||| |||||||||||||    
T  172275 attgcttatgtataagctatttctataactaaagataaaataa 172317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 261
Target Start/End: Original strand, 870981 - 871019
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaat 261  Q
    ||||||||||||| || ||||||||||||||||||||||    
T  870981 tgcttatgtataaactatttttataacaaaagataaaat 871019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 3319933 - 3319867
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    ||||||||| |||| |||||||| || || || || |||||||||||||||||||||  ||||||||    
T  3319933 ataagctctttcaatcagtctcataattgcttttgctagtagataagctcaaataagtcaatccaaa 3319867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 438
Target Start/End: Original strand, 6659763 - 6659829
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    ||||||| || |||| ||||||||||||| || || ||||||||||||| |||||||  ||||||||    
T  6659763 ataagctatcccaaatagtctcacaagtgcttatgctagtagataagctaaaataagtcaatccaaa 6659829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 438
Target Start/End: Original strand, 26866396 - 26866462
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    |||||||||  |||| ||||||| ||||  ||||||||||||||||||| |||||||  ||||||||    
T  26866396 ataagctcttccaaatagtctcagaagtatttgtgttagtagataagctgaaataagtcaatccaaa 26866462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 408
Target Start/End: Original strand, 37811852 - 37811971
Alignment:
Q  287 tgtaagcttttttcgtaagctattctagagaggttatggaaattagctgaaaacagtttacgaagatgttgtgagctgtttttatataagctctctcaaa 386  Q
    |||||||| ||||| ||||| ||  | ||||| | |||||||| || ||||||||||||| ||| ||||  | |||||||||   ||||| ||||||||     
T  37811852 tgtaagctgttttcataagccatcatggagagctaatggaaataagttgaaaacagtttatgaacatgtcataagctgtttt--cataagttctctcaac 37811949  T
Q  387 cagtctcacaagtgattgtgtt 408  Q
    |||| |||||| ||||||||||    
T  37811950 cagtatcacaaatgattgtgtt 37811971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 40304190 - 40304148
Alignment:
Q  221 attgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||    
T  40304190 attgcttaggtataagctatttatataacaaaagataaaataa 40304148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 263
Target Start/End: Original strand, 50319230 - 50319268
Alignment:
Q  225 cttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  50319230 cttatgtataagctatttctataacaaaagataaaataa 50319268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 1233023 - 1232986
Alignment:
Q  226 ttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  1233023 ttatgcataagctgtttttataacaaaacataaaataa 1232986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 438
Target Start/End: Complemental strand, 1565120 - 1565067
Alignment:
Q  385 aacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    |||| ||||||||||| ||||| |||||||||| |||||| ||| |||||||||    
T  1565120 aacactctcacaagtgcttgtgctagtagataatctcaaaaaagttaatccaaa 1565067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 14559058 - 14559123
Alignment:
Q  375 agctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaata 440  Q
    |||||||  ||||| |||| ||| || || ||| ||||||||| ||||||||||||||||||||||    
T  14559058 agctctcctaaacaatctcgcaaatgtttatgtcagtagataacctcaaataagctaatccaaata 14559123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 23895275 - 23895312
Alignment:
Q  226 ttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  23895275 ttatgtataagctatttctataacaaaagataaaataa 23895312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 29794053 - 29794012
Alignment:
Q  226 ttatgtataagctgtttttataacaaaagataaaataagtca 267  Q
    ||||||||| ||| ||||| ||||||||||||||||||||||    
T  29794053 ttatgtataggctatttttgtaacaaaagataaaataagtca 29794012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 45145165 - 45145202
Alignment:
Q  226 ttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  45145165 ttatgtataagctatttttatagcaaaagataaaataa 45145202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 51929843 - 51929794
Alignment:
Q  289 taagcttttttcgtaagctattctagagaggttatggaaattagctgaaa 338  Q
    |||||| ||||| ||||||||||||||||| |||||||||| ||| ||||    
T  51929843 taagctgttttcataagctattctagagagcttatggaaataagccgaaa 51929794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 1662657 - 1662725
Alignment:
Q  373 taagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaatag 441  Q
    ||||||||| |||| |||||| || ||  || || |||||||||||||||||||||| |||| ||||||    
T  1662657 taagctctcgcaaatagtctcgcatgtacttatgctagtagataagctcaaataagccaatctaaatag 1662725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 1730828 - 1730868
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||||| |||| |||||||||||||    
T  1730828 tgcttatgtataagctatttttttaaccaaagataaaataa 1730868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 4549802 - 4549842
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||| ||||| ||| ||||||||||||||||||||    
T  4549802 tgcttatgtacaagctatttctataacaaaagataaaataa 4549842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 440
Target Start/End: Complemental strand, 11893568 - 11893512
Alignment:
Q  384 aaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaata 440  Q
    ||||| ||||||||||  ||||| ||||||||||| |||||||||  ||||||||||    
T  11893568 aaacaatctcacaagtatttgtgctagtagataagttcaaataagtcaatccaaata 11893512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 13037800 - 13037836
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaa 259  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  13037800 tgcttatgtataagctatttctataacaaaagataaa 13037836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 428
Target Start/End: Original strand, 16980886 - 16980942
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    ||||||||||||||| ||||||||||||  || |||| ||| ||||| |||||||||    
T  16980886 ataagctctctcaaatagtctcacaagtacttatgttggtatataagttcaaataag 16980942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 441
Target Start/End: Complemental strand, 22416861 - 22416829
Alignment:
Q  409 agtagataagctcaaataagctaatccaaatag 441  Q
    ||||||||||||||||||||| |||||||||||    
T  22416861 agtagataagctcaaataagccaatccaaatag 22416829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 428
Target Start/End: Original strand, 27807198 - 27807254
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    ||||||||||||||||||||| |||| || || ||| |||||| ||| |||||||||    
T  27807198 ataagctctctcaaacagtcttacaaatgcttatgtcagtagaaaagttcaaataag 27807254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 428
Target Start/End: Complemental strand, 29793669 - 29793629
Alignment:
Q  388 agtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    ||||||||||||| || ||| ||||||||||||||||||||    
T  29793669 agtctcacaagtgtttatgtcagtagataagctcaaataag 29793629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 444
Target Start/End: Original strand, 34668740 - 34668811
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcc 444  Q
    |||||||||  ||||||| |||||||||| |  ||| |||| |||| ||||||||||| ||||||||||||||    
T  34668740 ataagctcttccaaacag-ctcacaagtgctcatgtcagtacataaactcaaataagccaatccaaataggcc 34668811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 424
Target Start/End: Complemental strand, 37272581 - 37272529
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaa 424  Q
    ||||||||||||||||| ||||||||||| ||  |  ||||||||||||||||    
T  37272581 ataagctctctcaaacaatctcacaagtgcttaagccagtagataagctcaaa 37272529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 400
Target Start/End: Complemental strand, 43371878 - 43371850
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtg 400  Q
    |||||||||||||||||||||||||||||    
T  43371878 ataagctctctcaaacagtctcacaagtg 43371850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 372 - 444
Target Start/End: Original strand, 22667486 - 22667558
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcc 444  Q
    |||| |||||||||||||||||||||||| || ||| ||||||||||||||||||||| |||| |||||||||    
T  22667486 ataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaatcgaaataggcc 22667558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 372 - 444
Target Start/End: Original strand, 22724125 - 22724197
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcc 444  Q
    |||| |||||||||||||||||||||||| || ||| ||||||||||||||||||||| |||| |||||||||    
T  22724125 ataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaatcgaaataggcc 22724197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 438
Target Start/End: Original strand, 50211818 - 50211884
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    ||||| ||||||||||||||| ||||||| || |||||||||||||||| ||||||| |||||||||    
T  50211818 ataagttctctcaaacagtcttacaagtgcttatgttagtagataagctaaaataagttaatccaaa 50211884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 380 - 444
Target Start/End: Complemental strand, 44014777 - 44014713
Alignment:
Q  380 tctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcc 444  Q
    ||||||||||||||||||||| || || |||||||||| ||||||||||| |||||||| |||||    
T  44014777 tctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacaggcc 44014713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 223 - 455
Target Start/End: Complemental strand, 20192740 - 20192510
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaat-aagtcagaccgttttttatataaggtgtaagcttttttcgtaagctattctagagaggtt 321  Q
    |||||||||||||||| ||| |||||||||||||||||| |||||| || | |||| ||||||  | |||||| |||| ||||  |||||  ||||| ||    
T  20192740 tgcttatgtataagctatttatataacaaaagataaaataaagtcaaacag-ttttcatataatctataagctgtttttgtaacttattcgggagagctt 20192642  T
Q  322 atggaaattagctgaaaacagtttacgaagatgttgtgagctgtttttatataagctctctcaaacagtctcacaagtgattgtgttagtagataagctc 421  Q
    |||||||| || ||||||||| ||| | | ||||  | |||||  ||| |||||||||||||| ||||| | | ||||| || ||| | |||||||  |     
T  20192641 atggaaatgagttgaaaacagcttatggacatgtcataagctg--tttctataagctctctcatacagtgtaagaagtgcttatgtcaatagataaattg 20192544  T
Q  422 aaataagctaatccaaataggccttaaatagaga 455  Q
    |||| ||  |||||||| ||||||| || |||||    
T  20192543 aaattagtcaatccaaacaggccttcaaaagaga 20192510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 434
Target Start/End: Complemental strand, 27796000 - 27795938
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatc 434  Q
    ||||||||||| ||||||| ||||||||| || ||  ||||||||||||||||||||||||||    
T  27796000 ataagctctcttaaacagtttcacaagtgcttatgccagtagataagctcaaataagctaatc 27795938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 425
Target Start/End: Complemental strand, 11041213 - 11041160
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaat 425  Q
    |||||||||||||||||||| |||||||| || | |||||||||||||||||||    
T  11041213 ataagctctctcaaacagtcccacaagtgcttatcttagtagataagctcaaat 11041160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 445
Target Start/End: Complemental strand, 24158503 - 24158430
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcct 445  Q
    |||||||||| |||||||| ||||||||  || ||| |||||||||||| |||||||| |||||||||| ||||    
T  24158503 ataagctctcgcaaacagtttcacaagtacttatgtcagtagataagcttaaataagccaatccaaatatgcct 24158430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 429
Target Start/End: Original strand, 48588684 - 48588797
Alignment:
Q  314 gagaggttatggaaattagctgaaaacagtttacgaagatgttgtgagctgtttttatataagctctctcaaacagtctcacaagtgattgtgttagtag 413  Q
    ||||| || ||||||||||||||||||| |||| ||| ||||  | || ||  ||||||||||||||||||| || |||||||| || |||| | ||||     
T  48588684 gagagtttgtggaaattagctgaaaacactttaagaacatgtcataagttg--tttatataagctctctcaagcaatctcacaaatgtttgtataagtaa 48588781  T
Q  414 ataagctcaaataagc 429  Q
    ||||| ||||||||||    
T  48588782 ataagttcaaataagc 48588797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 427
Target Start/End: Complemental strand, 20210915 - 20210860
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataa 427  Q
    ||||| ||||||||||||||||||||||| || ||| ||||||||| |||||||||    
T  20210915 ataagatctctcaaacagtctcacaagtggttatgtcagtagataacctcaaataa 20210860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 383 - 438
Target Start/End: Complemental strand, 21872271 - 21872216
Alignment:
Q  383 caaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    |||||||||||||||||| || ||| |||||||||| ||||||||| |||||||||    
T  21872271 caaacagtctcacaagtgcttatgtcagtagataagatcaaataagttaatccaaa 21872216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 438
Target Start/End: Original strand, 32663721 - 32663787
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    |||| |||||||||| |||||||||||||  | |||  |||||||||||||||||||| ||||||||    
T  32663721 ataaactctctcaaatagtctcacaagtgtatttgtcggtagataagctcaaataagccaatccaaa 32663787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 444
Target Start/End: Original strand, 41057244 - 41057310
Alignment:
Q  378 tctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcc 444  Q
    |||| |||||||||||||||||| || ||   |||||||||||||||||||| ||| ||||||||||    
T  41057244 tctcccaaacagtctcacaagtgcttatgcatgtagataagctcaaataagccaattcaaataggcc 41057310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 414
Target Start/End: Original strand, 1810061 - 1810102
Alignment:
Q  373 taagctctctcaaacagtctcacaagtgattgtgttagtaga 414  Q
    |||||||||||||| |||||||||||||||| ||||||||||    
T  1810061 taagctctctcaaatagtctcacaagtgattatgttagtaga 1810102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 30669101 - 30669064
Alignment:
Q  226 ttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  30669101 ttatgtataagctatttttataacaaaagataaaataa 30669064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 16790490 - 16790450
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| |||||||||||| |||||||||||    
T  16790490 tgcttatgtataagctatttttataacaacagataaaataa 16790450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 45590734 - 45590786
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaa 424  Q
    |||||||||| |||||||||||||||||| || || ||||||||||| |||||    
T  45590734 ataagctctcccaaacagtctcacaagtgcttatgctagtagataagttcaaa 45590786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 52413255 - 52413215
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  52413255 tgcttatgtataagctatttttataacaaaagatagaataa 52413215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 444
Target Start/End: Complemental strand, 5407440 - 5407369
Alignment:
Q  373 taagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcc 444  Q
    ||||||||  |||||| | |||||||||||| | | | ||||||||||||||||||||||| |||| |||||    
T  5407440 taagctctgccaaacaatatcacaagtgattatatcaatagataagctcaaataagctaatgcaaacaggcc 5407369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 259
Target Start/End: Complemental strand, 8007828 - 8007793
Alignment:
Q  224 gcttatgtataagctgtttttataacaaaagataaa 259  Q
    ||||||||||||||||||| ||||||||||||||||    
T  8007828 gcttatgtataagctgtttctataacaaaagataaa 8007793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 400
Target Start/End: Complemental strand, 14548804 - 14548680
Alignment:
Q  274 tttttatataaggtgtaagcttttttcgtaagctattctagagaggttatggaaattagctgaaaacagtttacgaagatgttgtgagctgtttttatat 373  Q
    |||| ||||||| | |||| | ||||| |||| |||||| ||||| |||||||||| ||||||||||||  ||  || ||||  |  | |||||| |||     
T  14548804 ttttcatataagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagcctattaaaatgtcatacgttgttttcata- 14548706  T
Q  374 aagctctctcaaacagtctcacaagtg 400  Q
     ||||||||||||||||||||||||||    
T  14548705 -agctctctcaaacagtctcacaagtg 14548680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 435
Target Start/End: Complemental strand, 41644513 - 41644369
Alignment:
Q  289 taagcttttttcgtaagctattctagagaggttatggaaattagctgaaaacagtttacgaagatgttgtgagctgtttttatataagctctctcaaaca 388  Q
    |||||| ||||| ||||||||  ||||||  ||| |||||| |||||||||||| ||| ||| ||||    || ||||||  |||||| ||||  |||||    
T  41644513 taagctgttttcataagctatcgtagagatcttaaggaaataagctgaaaacagcttatgaaaatgtcccaagttgtttt--tataagttctcctaaaca 41644416  T
Q  389 gtctcacaagtgattgtgttagtagataagctcaaataagctaatcc 435  Q
    || || |||||| || || ||||||||||||||||| ||| ||||||    
T  41644415 gtgtctcaagtgcttatgctagtagataagctcaaagaagttaatcc 41644369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 49465796 - 49465757
Alignment:
Q  224 gcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  49465796 gcttatgtgtaagctatttttataacaaaagataaaataa 49465757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 2413666 - 2413600
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    |||||||||||||||||| || |||||||||| || || ||||| || |||||||||  ||||||||    
T  2413666 ataagctctctcaaacagacttacaagtgattatgctaatagatgagttcaaataagtaaatccaaa 2413600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 344
Target Start/End: Complemental strand, 24887409 - 24887296
Alignment:
Q  231 tataagctgtttttataacaaaagataaaataa-gtcagaccgttttttatataaggtgtaagcttttttcgtaagctattctagagaggttatggaaat 329  Q
    |||||||| ||| |||||||| ||||||||||| |||| || || ||  ||||||| |  ||||| ||||| |||||||| || ||||| |||||| |||    
T  24887409 tataagctatttctataacaatagataaaataaagtcaaactgtattc-atataagctaaaagctgttttcataagctatcctggagagcttatgggaat 24887311  T
Q  330 tagctgaaaacagtt 344  Q
     ||||||||||||||    
T  24887310 aagctgaaaacagtt 24887296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 263
Target Start/End: Original strand, 25964384 - 25964418
Alignment:
Q  229 tgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||| ||||||||||||||||||||||||    
T  25964384 tgtataagctatttttataacaaaagataaaataa 25964418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 2128382 - 2128345
Alignment:
Q  226 ttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  2128382 ttatgtataagctatttctataacaaaagataaaataa 2128345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 8142841 - 8142804
Alignment:
Q  226 ttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  8142841 ttatgtataagctatttttatatcaaaagataaaataa 8142804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 27294432 - 27294497
Alignment:
Q  375 agctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaata 440  Q
    |||||||||||||||||||||||||| || ||  | ||||||| ||||| ||||| ||| ||||||    
T  27294432 agctctctcaaacagtctcacaagtgcttatgacaatagataaactcaagtaagccaattcaaata 27294497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 438
Target Start/End: Complemental strand, 30322096 - 30321939
Alignment:
Q  281 ataaggtgtaagcttttttcgtaagctattctagagaggttatggaaattagctgaaaacagtttacgaagatgttgtgagctgtttttatataagctct 380  Q
    ||||| |||||| | ||||| |||| ||| ||| |||| |||||||||| |  |||| |||| |||  || ||||| | |||||||||| |||| | |||    
T  30322096 ataagctgtaagttgttttcataagttatcctaaagagcttatggaaataaattgaacacagcttataaatatgttctaagctgtttttttatatgttct 30321997  T
Q  381 ctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    | |||||||| ||| | ||| || ||| |||| ||||||||||| ||| | |||||||    
T  30321996 cccaaacagtttcataggtgtttatgtcagtaaataagctcaaagaagttcatccaaa 30321939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 34254936 - 34254827
Alignment:
Q  230 gtataagctgtttttataacaaaagataaaataa-gtcagaccgttttttatataaggtgtaagcttttttcgtaagctattctagagaggttatggaaa 328  Q
    ||||||||| ||| | || |||| |||||||||| |||| || ||||||||||| || | ||| || ||||| ||||||||||| ||||  ||||| |||    
T  34254936 gtataagctatttctgtagcaaatgataaaataaagtcaaactgttttttatattagctataaactattttcataagctattctggagaacttatgtaaa 34254837  T
Q  329 ttagctgaaa 338  Q
    | ||||||||    
T  34254836 taagctgaaa 34254827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 438
Target Start/End: Complemental strand, 49605833 - 49605772
Alignment:
Q  377 ctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    |||||||||||| ||||||||||  || || ||| |||||| ||||||||| ||||||||||    
T  49605833 ctctctcaaacactctcacaagtacttatgctagaagataaactcaaataaactaatccaaa 49605772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 1395611 - 1395647
Alignment:
Q  227 tatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  1395611 tatgtataagctatttctataacaaaagataaaataa 1395647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 1395723 - 1395791
Alignment:
Q  373 taagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaatag 441  Q
    ||||||||||||||||||||| |||||| ||  || |  |||||||||||||||||  ||| |||||||    
T  1395723 taagctctctcaaacagtctcgcaagtgcttacgtcataagataagctcaaataagtcaatacaaatag 1395791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 3757984 - 3758024
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||||| |||||||| |||||||||    
T  3757984 tgcttatgtataagctatttttgtaacaaaatataaaataa 3758024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 436
Target Start/End: Complemental strand, 33880544 - 33880480
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatcca 436  Q
    ||||| |||| |||||||| || ||| ||||| ||| | ||||||||||||||||||| ||||||    
T  33880544 ataagttctcccaaacagtttctcaaatgattatgtcaatagataagctcaaataagccaatcca 33880480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 341
Target Start/End: Original strand, 38462220 - 38462335
Alignment:
Q  226 ttatgtataagctgtttttataacaaaagataaaat-aagtcagaccgttttttatataaggtgtaagcttttttcgtaagctattctagagaggttatg 324  Q
    |||| |||||||| ||| |||| ||||||||||||| |||||| || | |||| ||||| | | ||| || ||||| |||||||| | ||| || |||||    
T  38462220 ttatttataagctatttctataccaaaagataaaataaagtcaaactg-ttttcatatatgctataaactgttttcataagctatccaagatagcttatg 38462318  T
Q  325 gaaattagctgaaaaca 341  Q
    ||||| |||||||||||    
T  38462319 gaaataagctgaaaaca 38462335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 41028985 - 41028945
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||| |||||||||||| |||||||    
T  41028985 tgcttatgtataagctatttctataacaaaagaaaaaataa 41028945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 42808923 - 42808955
Alignment:
Q  231 tataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||| ||||||||||||||||||||    
T  42808923 tataagctgtttctataacaaaagataaaataa 42808955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 48528559 - 48528615
Alignment:
Q  290 aagcttttttcgtaagctattctagagaggttatggaaattagctgaaaacagttta 346  Q
    ||||| ||||| ||||||||||| ||||| |||| ||||| |||||||||| |||||    
T  48528559 aagctgttttcataagctattctggagagtttatagaaataagctgaaaactgttta 48528615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 49546621 - 49546581
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||| |||| | ||||||||||||||||||||||||    
T  49546621 tgcttatgtgtaagatatttttataacaaaagataaaataa 49546581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 444
Target Start/End: Original strand, 50015969 - 50016041
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcc 444  Q
    ||||| ||||||||||||||||||||||| || ||  | ||||||| || | |||||| |||||||| |||||    
T  50015969 ataagttctctcaaacagtctcacaagtgtttatgccaatagataaactgagataagccaatccaaagaggcc 50016041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 374 - 444
Target Start/End: Original strand, 9700086 - 9700156
Alignment:
Q  374 aagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcc 444  Q
    ||||||||||||| ||||||||||||| || || ||||||||||||||||||||| ||||||||| |||||    
T  9700086 aagctctctcaaatagtctcacaagtgtttatgctagtagataagctcaaataagttaatccaaacaggcc 9700156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 380 - 444
Target Start/End: Original strand, 16162851 - 16162915
Alignment:
Q  380 tctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcc 444  Q
    ||||||||||||||||||||| || || |||||||||| ||||||||||| |||||||| |||||    
T  16162851 tctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacaggcc 16162915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 446
Target Start/End: Complemental strand, 43393760 - 43393685
Alignment:
Q  371 tataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcctt 446  Q
    ||||||||||| |||||||||||| ||||| || ||  |||||||||||| |||||||  ||||||||||||||||    
T  43393760 tataagctctcccaaacagtctcaaaagtgtttttgcaagtagataagcttaaataagtcaatccaaataggcctt 43393685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 428
Target Start/End: Original strand, 1664452 - 1664508
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    |||||||||| |||||||||||||||||| || || |||||||||| ||||||||||    
T  1664452 ataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataag 1664508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 342
Target Start/End: Original strand, 11795028 - 11795147
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa-gtcagaccgttttttatataaggtgtaagcttttttcgtaagctattctagagaggtt 321  Q
    |||||||||||||||| ||| ||| |||||| ||| ||||| |||| || |||||  ||||||| | ||||||  |||| ||||||||| | ||||| ||    
T  11795028 tgcttatgtataagctttttctatgacaaaacatacaataaagtcacactgttttc-atataagttataagctgatttcataagctattatggagagctt 11795126  T
Q  322 atggaaattagctgaaaacag 342  Q
    |||||||| ||||||||||||    
T  11795127 atggaaataagctgaaaacag 11795147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 341
Target Start/End: Complemental strand, 28769473 - 28769355
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaat-aagtcagaccgttttttatataaggtgtaagcttttttcgtaagctattctagagaggtt 321  Q
    |||||||||||||||| ||  |||||||||  ||||||| |||||| ||  |||| | |||||| | |||||| ||||| ||||||||| | ||||| ||    
T  28769473 tgcttatgtataagctattcctataacaaactataaaattaagtcaaactattttct-tataagctataagctgttttcataagctattttggagagttt 28769375  T
Q  322 atggaaattagctgaaaaca 341  Q
    |||||||| |||||||||||    
T  28769374 atggaaataagctgaaaaca 28769355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 2487995 - 2487929
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    ||||| |||| |||||||||||||||||| || ||| ||||||| | ||||||||||| ||||||||    
T  2487995 ataagttctcccaaacagtctcacaagtgcttatgtcagtagatgaactcaaataagccaatccaaa 2487929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 6496878 - 6496812
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    ||||||| || ||||||||| ||||||||||| ||||||||||||| |||||| |||  ||||||||    
T  6496878 ataagctttcccaaacagtcacacaagtgattatgttagtagataaactcaaacaagtcaatccaaa 6496812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 341
Target Start/End: Complemental strand, 11188289 - 11188171
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataagtcagaccgttttttatataaggtgtaagcttttttcgtaagctattctagagaggtta 322  Q
    |||||||||||||| ||||| ||||||||||||||||||||  |  | |  ||||||||| || | ||| || ||||  |||||||| |||||||| |||    
T  11188289 tgcttatgtataagttgtttctataacaaaagataaaataaaaccaaactatttttatattagttataaactattttgataagctatcctagagagttta 11188190  T
Q  323 tggaaattagctgaaaaca 341  Q
    ||| ||| | |||||||||    
T  11188189 tggtaataaactgaaaaca 11188171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 438
Target Start/End: Original strand, 33553323 - 33553389
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    |||||||||  |||||||  ||||||||| || ||||  ||||||||||||||||||||||||||||    
T  33553323 ataagctcttccaaacagcatcacaagtgcttatgttgatagataagctcaaataagctaatccaaa 33553389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 385 - 438
Target Start/End: Original strand, 10488559 - 10488612
Alignment:
Q  385 aacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    |||||||||||| ||| || ||||||| ||||||||||||||||| ||||||||    
T  10488559 aacagtctcacatgtgtttatgttagttgataagctcaaataagccaatccaaa 10488612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 372 - 425
Target Start/End: Original strand, 24326114 - 24326167
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaat 425  Q
    |||||||||| |||||||||||||||||| || ||  |||||||||||||||||    
T  24326114 ataagctctcccaaacagtctcacaagtgcttatgccagtagataagctcaaat 24326167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 10383767 - 10383819
Alignment:
Q  224 gcttatgtataagctgtttttataacaaaagataaaataagtcagaccgtttt 276  Q
    ||||||||||||||||||||||||| ||| |||||||||| ||| || |||||    
T  10383767 gcttatgtataagctgtttttataataaatgataaaataaatcaaactgtttt 10383819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 438
Target Start/End: Complemental strand, 14926967 - 14926903
Alignment:
Q  374 aagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    ||||||||||||||||||||||||||| || ||  |||| ||||| |||||||||  ||||||||    
T  14926967 aagctctctcaaacagtctcacaagtgcttatgccagtaaataagttcaaataagtcaatccaaa 14926903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 30277313 - 30277261
Alignment:
Q  289 taagcttttttcgtaagctattctagagaggttatggaaattagctgaaaaca 341  Q
    |||||| ||||| |||||||| |||||||| |||||||||| |||||||||||    
T  30277313 taagctgttttcataagctatcctagagagtttatggaaataagctgaaaaca 30277261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 427
Target Start/End: Complemental strand, 7918768 - 7918713
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataa 427  Q
    |||||||||| |||||||||||||||||| || || ||||||||||| | ||||||    
T  7918768 ataagctctcccaaacagtctcacaagtgtttatgctagtagataagtttaaataa 7918713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 428
Target Start/End: Original strand, 11415141 - 11415293
Alignment:
Q  274 tttttatataaggtgtaagcttttttcgtaagctattctagagaggttatggaaattagctgaaaacagtttacgaagatgttgtgagctgtttttatat 373  Q
    |||||||||||| | || ||| ||||| |||||||| |||||||| || || |||| |||||| || || ||| | | ||||| | |||||  |||  ||    
T  11415141 tttttatataagttatacgctgttttcataagctatcctagagagtttgtgaaaataagctgagaatagcttatggacatgttataagctg--tttccat 11415238  T
Q  374 aagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    || |||||| ||||| ||||||||||  || |||||||| |||||| ||||||||    
T  11415239 aaactctctaaaacaatctcacaagtacttatgttagtaaataagcacaaataag 11415293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 26215433 - 26215472
Alignment:
Q  224 gcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  26215433 gcttatgtataagctatttctataacaaaagataaaataa 26215472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 341
Target Start/End: Original strand, 8062317 - 8062383
Alignment:
Q  275 ttttatataaggtgtaagcttttttcgtaagctattctagagaggttatggaaattagctgaaaaca 341  Q
    |||| |||||| | |||||| ||||| ||||||||  ||||||| |||||||||| |||||||||||    
T  8062317 ttttgtataagctataagctgttttcataagctatcttagagagattatggaaataagctgaaaaca 8062383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 437
Target Start/End: Original strand, 8629199 - 8629261
Alignment:
Q  375 agctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaa 437  Q
    ||||||||||| |||||||||||||| || ||  ||||| |||||| |||||||| |||||||    
T  8629199 agctctctcaagcagtctcacaagtgcttatgccagtaggtaagcttaaataagcaaatccaa 8629261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 10062128 - 10062062
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    |||||||||| |||| ||| ||  ||||| |  ||||||||||||||||||||||||| ||||||||    
T  10062128 ataagctctcccaaatagtttcgtaagtgttgatgttagtagataagctcaaataagccaatccaaa 10062062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 10114426 - 10114468
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataagt 265  Q
    |||||||||||||||| ||| |||| |||||||||||||||||    
T  10114426 tgcttatgtataagctatttctatagcaaaagataaaataagt 10114468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 263
Target Start/End: Original strand, 42597339 - 42597377
Alignment:
Q  225 cttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  42597339 cttatgtataagctatttctataacaaaagataaaataa 42597377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 443
Target Start/End: Complemental strand, 44236797 - 44236739
Alignment:
Q  385 aacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggc 443  Q
    |||||||||||||||| || ||  ||||||||| |||||||||| ||||||||| ||||    
T  44236797 aacagtctcacaagtgcttatgccagtagataaactcaaataaggtaatccaaacaggc 44236739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 1112789 - 1112830
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataag 264  Q
    |||||||||||| ||| ||| |||||||||||||||||||||    
T  1112789 tgcttatgtatatgctatttctataacaaaagataaaataag 1112830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 438
Target Start/End: Complemental strand, 9130269 - 9130240
Alignment:
Q  409 agtagataagctcaaataagctaatccaaa 438  Q
    ||||||||||||||||||||||||||||||    
T  9130269 agtagataagctcaaataagctaatccaaa 9130240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 425
Target Start/End: Original strand, 21130695 - 21130748
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaat 425  Q
    ||||||||||||||||||||||||||||  || ||| || | ||||||||||||    
T  21130695 ataagctctctcaaacagtctcacaagtatttatgtcagcacataagctcaaat 21130748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 444
Target Start/End: Complemental strand, 43717882 - 43717849
Alignment:
Q  411 tagataagctcaaataagctaatccaaataggcc 444  Q
    ||||||||||||||||||| ||||||||||||||    
T  43717882 tagataagctcaaataagccaatccaaataggcc 43717849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 2606138 - 2606198
Alignment:
Q  378 tctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    |||| |||||||| |||| ||||||| ||| ||||||||||||| ||||||  ||||||||    
T  2606138 tctcccaaacagtttcactagtgattatgtcagtagataagctcgaataagtcaatccaaa 2606198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 259
Target Start/End: Original strand, 6950266 - 6950294
Alignment:
Q  231 tataagctgtttttataacaaaagataaa 259  Q
    |||||||||||||||||||||||||||||    
T  6950266 tataagctgtttttataacaaaagataaa 6950294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 444
Target Start/End: Complemental strand, 10075540 - 10075468
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcc 444  Q
    ||||||||||| |||||||||| |||||  || ||  ||||||||| |||||||||| ||||| ||| |||||    
T  10075540 ataagctctcttaaacagtctcgcaagtatttatgccagtagataaactcaaataagttaatcgaaacaggcc 10075468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 10075634 - 10075574
Alignment:
Q  274 tttttatataaggtgtaagcttttttcgtaagctattctagagaggttatggaaattagct 334  Q
    |||||||||||| | |||||| ||||| |||||||| |||||||| ||||| |||| ||||    
T  10075634 tttttatataagttataagctattttcataagctatcctagagagcttatgaaaataagct 10075574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 14482138 - 14482178
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||||||| || ||| ||||||||||||||||||||    
T  14482138 tgcttatgtataaactatttctataacaaaagataaaataa 14482178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 438
Target Start/End: Original strand, 18331815 - 18331863
Alignment:
Q  390 tctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    ||||||||||| || |||||||||||||| |||||||||  ||||||||    
T  18331815 tctcacaagtgcttatgttagtagataagatcaaataagtcaatccaaa 18331863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 444
Target Start/End: Complemental strand, 30191128 - 30191056
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcc 444  Q
    |||||||||| |||||||||| ||||||| || ||  | ||||||| |||||||||||| || |||| |||||    
T  30191128 ataagctctcccaaacagtctaacaagtgcttatgccaatagataaactcaaataagcttatgcaaacaggcc 30191056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 427
Target Start/End: Complemental strand, 31884916 - 31884872
Alignment:
Q  383 caaacagtctcacaagtgattgtgttagtagataagctcaaataa 427  Q
    |||||| ||||||||||| || || ||||||||||||||||||||    
T  31884916 caaacactctcacaagtgcttatgctagtagataagctcaaataa 31884872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 446
Target Start/End: Complemental strand, 43393661 - 43393625
Alignment:
Q  410 gtagataagctcaaataagctaatccaaataggcctt 446  Q
    |||||||||||||||||||| |||| |||||||||||    
T  43393661 gtagataagctcaaataagccaatcgaaataggcctt 43393625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 45)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 221 - 341
Target Start/End: Original strand, 16889669 - 16889789
Alignment:
Q  221 attgcttatgtataagctgtttttataacaaaagataaa-ataagtcagaccgttttttatataaggtgtaagcttttttcgtaagctattctagagagg 319  Q
    |||||||||||||||||| |||  |||||||||||||||  ||||||| || | |||||||| ||| | |||||| ||||| |||||||| ||||||||     
T  16889669 attgcttatgtataagctatttccataacaaaagataaacttaagtcaaactg-tttttatagaagctataagctgttttcataagctatgctagagagt 16889767  T
Q  320 ttatggaaattagctgaaaaca 341  Q
    |||||||||| | |||||||||    
T  16889768 ttatggaaataatctgaaaaca 16889789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 438
Target Start/End: Complemental strand, 25720405 - 25720338
Alignment:
Q  371 tataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    |||||||||||||| ||||||||||||||| || ||  ||||||||| ||||||||||||||| ||||    
T  25720405 tataagctctctcagacagtctcacaagtgcttatgccagtagataacctcaaataagctaattcaaa 25720338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 379 - 441
Target Start/End: Complemental strand, 10771868 - 10771806
Alignment:
Q  379 ctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaatag 441  Q
    |||||||||| ||||||||||| || ||  ||||||||||||||||||||| |||||||||||    
T  10771868 ctctcaaacaatctcacaagtgcttatgccagtagataagctcaaataagccaatccaaatag 10771806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 444
Target Start/End: Complemental strand, 7550505 - 7550433
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcc 444  Q
    ||||||||||||||| |||||||||||| ||| ||| ||| ||||||||||||||| | |||| ||| |||||    
T  7550505 ataagctctctcaaagagtctcacaagtaattatgtcagtggataagctcaaataaaccaatcaaaacaggcc 7550433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 428
Target Start/End: Original strand, 8090019 - 8090075
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    ||||||||||||||| |||||| | |||| ||||||||||||||||| |||||||||    
T  8090019 ataagctctctcaaatagtctcgcgagtgcttgtgttagtagataagttcaaataag 8090075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 10391289 - 10391333
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataagtca 267  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||    
T  10391289 tgcttacgtataagctatttttataacaaaagataaaataagtca 10391333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 423
Target Start/End: Original strand, 34975450 - 34975498
Alignment:
Q  375 agctctctcaaacagtctcacaagtgattgtgttagtagataagctcaa 423  Q
    |||||| ||||||||||||| |||||||| |||||||||||||||||||    
T  34975450 agctctttcaaacagtctcataagtgattatgttagtagataagctcaa 34975498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 441
Target Start/End: Complemental strand, 11615619 - 11615572
Alignment:
Q  394 acaagtgattgtgttagtagataagctcaaataagctaatccaaatag 441  Q
    ||||||| || ||||||||||||||||||||||||| |||||||||||    
T  11615619 acaagtgtttatgttagtagataagctcaaataagccaatccaaatag 11615572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 383 - 446
Target Start/End: Complemental strand, 40335849 - 40335786
Alignment:
Q  383 caaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcctt 446  Q
    |||||||||||||||||| |||||  ||||||||| ||||||||||  |||||||| |||||||    
T  40335849 caaacagtctcacaagtgtttgtgcgagtagataaactcaaataagtcaatccaaacaggcctt 40335786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 428
Target Start/End: Original strand, 4855777 - 4855834
Alignment:
Q  371 tataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    |||||||||||||||||||||||||||||| ||  || | || |||||||||||||||    
T  4855777 tataagctctctcaaacagtctcacaagtgtttaagtcattatataagctcaaataag 4855834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 438
Target Start/End: Complemental strand, 39257380 - 39257315
Alignment:
Q  373 taagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    |||||| || || ||||||||||||||| || |||||||||||||||| |||||||| | ||||||    
T  39257380 taagctttcgcacacagtctcacaagtgcttatgttagtagataagcttaaataagccagtccaaa 39257315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 7096261 - 7096221
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  7096261 tgcttatgtataagctatttctataacaaaagataaaataa 7096221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 428
Target Start/End: Complemental strand, 12407717 - 12407661
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    |||||||||||||||| |||||||||||| || ||| | |||||||| |||||||||    
T  12407717 ataagctctctcaaaccgtctcacaagtgtttatgtcaatagataagttcaaataag 12407661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 13224365 - 13224405
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  13224365 tgcttatgtataagctatttctataacaaaagataaaataa 13224405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 342
Target Start/End: Original strand, 14295454 - 14295561
Alignment:
Q  235 agctgtttttataacaaaagataaaataa-gtcagaccgttttttatataaggtgtaagcttttttcgtaagctattctagagaggttatggaaattagc 333  Q
    |||| ||| |||||||||||||||||||| |||| || |||||  ||||||| | |||||| |||||||||||||| || ||||| || | ||| | |||    
T  14295454 agctatttctataacaaaagataaaataaagtcaaactgttttc-atataagctataagctgttttcgtaagctatcctggagagcttttagaagtaagc 14295552  T
Q  334 tgaaaacag 342  Q
    |||||||||    
T  14295553 tgaaaacag 14295561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 341
Target Start/End: Complemental strand, 18704167 - 18704052
Alignment:
Q  225 cttatgtataagctgtttttataacaaaagataaaataagtcagaccgttttttatataaggtgtaagcttttttcgtaagctattctagagaggttatg 324  Q
    |||||||||||| | ||| ||||||||||||||||  |||||| | |  |||||||||||| | |||| | ||||| |||||||||  | |||  |||||    
T  18704167 cttatgtataagttatttctataacaaaagataaataaagtca-agctatttttatataagctataagttgttttcataagctattacaaagatcttatg 18704069  T
Q  325 gaaattagctgaaaaca 341  Q
    ||||| |||||||||||    
T  18704068 gaaataagctgaaaaca 18704052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 339
Target Start/End: Original strand, 36638687 - 36638799
Alignment:
Q  228 atgtataagctgtttttataacaaaagataaaataagtcagacc-gttttttatataaggtgtaagcttttttcgtaagctattctagagaggttatgga 326  Q
    |||||||| || ||| ||||||||||||||||| || |  |||| |||||| |||||||    ||||| ||||| |||| ||| |||||||| |||||||    
T  36638687 atgtataaactatttctataacaaaagataaaacaaattcgacctgtttttcatataagcctaaagctgttttcataagttatcctagagagcttatgga 36638786  T
Q  327 aattagctgaaaa 339  Q
    ||| |||||||||    
T  36638787 aataagctgaaaa 36638799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 427
Target Start/End: Complemental strand, 37611276 - 37611147
Alignment:
Q  296 ttttcgtaagctattctagagaggttatggaaattagctgaaaacagtttacgaagatgttgtgagctgtttttatataagctctctcaaacagtctcac 395  Q
    ||||| ||||||||  | ||||| |||||||||| | |||||||||| ||| ||| ||||    || |||||| |||  |||||||||||||| ||||||    
T  37611276 ttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcata--agctctctcaaacaatctcac 37611179  T
Q  396 aagtgattgtgttagtagataagctcaaataa 427  Q
    ||||  |||||  |||||||||| ||||||||    
T  37611178 aagtacttgtgccagtagataagttcaaataa 37611147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 427
Target Start/End: Complemental strand, 37788006 - 37787877
Alignment:
Q  296 ttttcgtaagctattctagagaggttatggaaattagctgaaaacagtttacgaagatgttgtgagctgtttttatataagctctctcaaacagtctcac 395  Q
    ||||| ||||||||  | ||||| |||||||||| | |||||||||| ||| ||| ||||    || |||||| |||  |||||||||||||| ||||||    
T  37788006 ttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcata--agctctctcaaacaatctcac 37787909  T
Q  396 aagtgattgtgttagtagataagctcaaataa 427  Q
    ||||  |||||  |||||||||| ||||||||    
T  37787908 aagtacttgtgccagtagataagttcaaataa 37787877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 40048414 - 40048374
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  40048414 tgcttatgtataagttgtttctataacaaaagataaaataa 40048374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 12460131 - 12460092
Alignment:
Q  226 ttatgtataagctgtttttataacaaaagataaaataagt 265  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  12460131 ttatgtataagctatttctataacaaaagataaaataagt 12460092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 263
Target Start/End: Complemental strand, 19113254 - 19113211
Alignment:
Q  220 aattgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| || |||||||||||||| |||||||||    
T  19113254 aattgcttatgtataaactatttttataacaaaaaataaaataa 19113211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 445
Target Start/End: Original strand, 42034153 - 42034216
Alignment:
Q  382 tcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcct 445  Q
    |||||||||  || ||||| || ||| ||||| |||||||||||||||||||||||| ||||||    
T  42034153 tcaaacagttgcataagtgcttatgtcagtaggtaagctcaaataagctaatccaaacaggcct 42034216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 448
Target Start/End: Complemental strand, 25705628 - 25705570
Alignment:
Q  390 tctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggccttaa 448  Q
    ||||||||||| || |||||||||||||| ||||||||  ||||||||| |||| ||||    
T  25705628 tctcacaagtgcttatgttagtagataagttcaaataatttaatccaaacaggctttaa 25705570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 12407792 - 12407755
Alignment:
Q  226 ttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  12407792 ttatgtataagctatttctataacaaaagataaaataa 12407755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 428
Target Start/End: Original strand, 14980591 - 14980648
Alignment:
Q  371 tataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    |||||||||||||||||||||||   |||| || ||  ||||||||||||||||||||    
T  14980591 tataagctctctcaaacagtctctatagtgcttatgccagtagataagctcaaataag 14980648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 423
Target Start/End: Original strand, 17259302 - 17259351
Alignment:
Q  374 aagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaa 423  Q
    |||||| |||||  ||||||||||||| || |||||||||||||||||||    
T  17259302 aagctcactcaacaagtctcacaagtgcttatgttagtagataagctcaa 17259351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 442
Target Start/End: Original strand, 31723889 - 31723958
Alignment:
Q  373 taagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaatagg 442  Q
    ||||||||  |||| ||||||| ||||| || || ||||| |||||||||||||||  ||||||||||||    
T  31723889 taagctcttacaaatagtctcataagtgtttatgctagtacataagctcaaataagtcaatccaaatagg 31723958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 428
Target Start/End: Complemental strand, 1084126 - 1084070
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    |||| |||||||||||||| ||||||||| || ||| |||| |||| ||||||||||    
T  1084126 ataaactctctcaaacagtttcacaagtgcttatgtcagtaaataaactcaaataag 1084070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 1773557 - 1773521
Alignment:
Q  225 cttatgtataagctgtttttataacaaaagataaaat 261  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  1773557 cttatgtataagctatttctataacaaaagataaaat 1773521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 444
Target Start/End: Complemental strand, 6938684 - 6938648
Alignment:
Q  408 tagtagataagctcaaataagctaatccaaataggcc 444  Q
    |||||||||||||||||||| |||||||||| |||||    
T  6938684 tagtagataagctcaaataacctaatccaaacaggcc 6938648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 442
Target Start/End: Original strand, 7674768 - 7674800
Alignment:
Q  410 gtagataagctcaaataagctaatccaaatagg 442  Q
    |||||||||||||||||||| ||||||||||||    
T  7674768 gtagataagctcaaataagccaatccaaatagg 7674800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 11615452 - 11615484
Alignment:
Q  231 tataagctgtttttataacaaaagataaaataa 263  Q
    |||||||| ||||||||||||||||||||||||    
T  11615452 tataagctatttttataacaaaagataaaataa 11615484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 422
Target Start/End: Complemental strand, 13781860 - 13781812
Alignment:
Q  374 aagctctctcaaacagtctcacaagtgattgtgttagtagataagctca 422  Q
    |||||||  |||||||||||||||||  || ||||||||||||||||||    
T  13781860 aagctctaccaaacagtctcacaagtacttatgttagtagataagctca 13781812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 444
Target Start/End: Complemental strand, 14599359 - 14599287
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcc 444  Q
    ||||||||||||||||| ||| ||||||| || || ||||| ||||| ||||||||   |||||||| |||||    
T  14599359 ataagctctctcaaacaatcttacaagtgtttatgctagtaaataagttcaaataactgaatccaaacaggcc 14599287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 442
Target Start/End: Complemental strand, 14706253 - 14706201
Alignment:
Q  390 tctcacaagtgattgtgttagtagataagctcaaataagctaatccaaatagg 442  Q
    ||||||||||| || ||| ||||| ||||||||||||||  ||||||||||||    
T  14706253 tctcacaagtgtttatgtcagtaggtaagctcaaataagtcaatccaaatagg 14706201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 20982269 - 20982229
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||| ||||||||| ||||||||||    
T  20982269 tgcttatgtataagctatttctataacaaaggataaaataa 20982229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 428
Target Start/End: Complemental strand, 21782643 - 21782587
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    |||||||||||||||||| |||||||||| || ||  |||||||||  |||||||||    
T  21782643 ataagctctctcaaacagcctcacaagtgtttatgccagtagataatttcaaataag 21782587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 26516234 - 26516274
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||| || |||||||||||||||||    
T  26516234 tgcttatgtataagctatttctaaaacaaaagataaaataa 26516274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 29588816 - 29588856
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||| |||||||||| |||||||||    
T  29588816 tgcttatgtataagctatttctataacaaaatataaaataa 29588856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 428
Target Start/End: Original strand, 32849261 - 32849317
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    ||||| |||| ||||||| |||||||||| || || ||||||||||||| |||||||    
T  32849261 ataagttctcccaaacagcctcacaagtgcttatgatagtagataagcttaaataag 32849317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 37063208 - 37063168
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||||||| || ||| ||||||||||||||||||||    
T  37063208 tgcttatgtataaactatttctataacaaaagataaaataa 37063168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 37588443 - 37588375
Alignment:
Q  274 tttttatataaggtgtaagcttttttcgtaagctattctagagaggttatggaaattagctgaaaacag 342  Q
    |||| ||||||| | |||| | ||||| |||| |||||| ||||| |||||||||| ||||||||||||    
T  37588443 ttttcatataagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacag 37588375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 37968960 - 37969012
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaa 424  Q
    ||||| ||||||||||||| ||||||||  || ||| ||||||||||||||||    
T  37968960 ataagatctctcaaacagtttcacaagtacttatgtcagtagataagctcaaa 37969012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 39128575 - 39128615
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||||||||||  || ||||||||||||||||||||    
T  39128575 tgcttatgtataagctaattctataacaaaagataaaataa 39128615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 372 - 447
Target Start/End: Original strand, 2996656 - 2996731
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcctta 447  Q
    ||||||||||||||||||||||| ||||| || ||| | || ||||| ||||||||||||||| ||||||||||||    
T  2996656 ataagctctctcaaacagtctcaaaagtgcttatgtcaataaataagttcaaataagctaatctaaataggcctta 2996731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 443
Target Start/End: Complemental strand, 27123339 - 27123268
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggc 443  Q
    ||||||||||||||||||||||||||||  || || ||||  ||||||||||||||| ||||||||| ||||    
T  27123339 ataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataagttaatccaaacaggc 27123268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 426
Target Start/End: Complemental strand, 18628540 - 18628486
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaata 426  Q
    |||||||||| |||||||||||||||||| || ||| ||||||||||||||||||    
T  18628540 ataagctctcccaaacagtctcacaagtgtttatgtcagtagataagctcaaata 18628486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 397
Target Start/End: Original strand, 8074750 - 8074871
Alignment:
Q  274 tttttatataaggtgtaagcttttttcgtaagctattctagagaggttatggaaattagctgaaaacagtttacgaagatgttgtgagctgtttttatat 373  Q
    |||||||||||| |||||| |  |||| ||||||||  ||||||| |||||||| |||| |||||| || ||||| | || |  | |||||  ||| |||    
T  8074750 tttttatataagctgtaagttgctttcctaagctatcttagagagcttatggaagttagatgaaaagagattacggacatttcattagctg--tttctat 8074847  T
Q  374 aagctctctcaaacagtctcacaa 397  Q
    ||||||||||||||||||||||||    
T  8074848 aagctctctcaaacagtctcacaa 8074871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 427
Target Start/End: Original strand, 4691939 - 4691986
Alignment:
Q  380 tctcaaacagtctcacaagtgattgtgttagtagataagctcaaataa 427  Q
    ||||||| |||||||||||||||||||  |||||||||||||||||||    
T  4691939 tctcaaatagtctcacaagtgattgtgacagtagataagctcaaataa 4691986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 19429457 - 19429391
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    |||||||||| |||||||||||||||||| || |   |||| |||||||||||||||| ||||||||    
T  19429457 ataagctctcccaaacagtctcacaagtgtttataccagtaaataagctcaaataagccaatccaaa 19429391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 400
Target Start/End: Complemental strand, 30207704 - 30207530
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataagtcagaccgttttttatataaggtgtaagcttttttcgtaagctattctagagaggtta 322  Q
    |||||||||||| | |  || |||||||||| ||||||||| ||| || |||||  ||||||| | |||| | ||||| |||||||   ||||||| |||    
T  30207704 tgcttatgtatatgttagttctataacaaaaaataaaataaatcaaactgttttc-atataagctataagttgttttcataagctaccttagagagatta 30207606  T
Q  323 tggaaattagctgaaaacagtttacgaagatgttgtgagctgtttttatataagctctctcaaacagtctcacaagtg 400  Q
    ||||||| |||||||||||| ||||  | ||||  |  |||||| |  ||||||||||||| | ||||||||||||||    
T  30207605 tggaaataagctgaaaacagcttacagacatgtcatatgctgttct--tataagctctctcgatcagtctcacaagtg 30207530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 440
Target Start/End: Original strand, 25896866 - 25896935
Alignment:
Q  371 tataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaata 440  Q
    |||||||||||  ||||||||||||||||| |  || |||||||||| ||||||||||  ||||||||||    
T  25896866 tataagctctcctaaacagtctcacaagtgctaatgctagtagataaactcaaataagtgaatccaaata 25896935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 372 - 437
Target Start/End: Original strand, 46860001 - 46860066
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaa 437  Q
    ||||||||||||||||||| ||||||||| || ||| | |||||||| |||||||||  |||||||    
T  46860001 ataagctctctcaaacagtttcacaagtgcttatgtgaatagataagttcaaataagtcaatccaa 46860066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 50745928 - 50745976
Alignment:
Q  214 atgataaattgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||| |||||||| |||||| ||||||||||||||||||||||||    
T  50745928 atgataaat-gcttatgtctaagctatttttataacaaaagataaaataa 50745976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 1312860 - 1312924
Alignment:
Q  50 ctattttggagactttatggaaatgagctggaaacagtatatggatatgttataacttgttttcg 114  Q
    |||| ||||||| ||||||||||| ||||| ||||||| |||| |||||| |||| |||||||||    
T  1312860 ctatcttggagagtttatggaaataagctgaaaacagtttatgaatatgtaataagttgttttcg 1312924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 5131370 - 5131326
Alignment:
Q  219 aaattgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||| |||||||||||| ||||| ||||||||||||||||||||    
T  5131370 aaatttcttatgtataagttgtttatataacaaaagataaaataa 5131326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 8422971 - 8422931
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  8422971 tgcttatgtataagctatttttataaaaaaagataaaataa 8422931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 434
Target Start/End: Complemental strand, 18512500 - 18512440
Alignment:
Q  374 aagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatc 434  Q
    ||||||| ||||  ||||||||||||| || ||| |||||||||||||||||||| |||||    
T  18512500 aagctctttcaactagtctcacaagtgtttatgtcagtagataagctcaaataagttaatc 18512440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 51556001 - 51555961
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| || |||||||||||||||||||||    
T  51556001 tgcttatgtataagctattattataacaaaagataaaataa 51555961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 427
Target Start/End: Original strand, 4071961 - 4072016
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataa 427  Q
    ||||||||||||||||||||||||||||| || | ||| ||| ||| |||||||||    
T  4071961 ataagctctctcaaacagtctcacaagtgcttatattaatagttaacctcaaataa 4072016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 448
Target Start/End: Complemental strand, 17822815 - 17822776
Alignment:
Q  409 agtagataagctcaaataagctaatccaaataggccttaa 448  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  17822815 agtagataagctcaaataagttaatccaaacaggccttaa 17822776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 436
Target Start/End: Original strand, 21157852 - 21157915
Alignment:
Q  373 taagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatcca 436  Q
    ||||||||  |||||||||| ||||||| || ||| ||||||| ||||||||||||| ||||||    
T  21157852 taagctcttccaaacagtcttacaagtgcttatgtcagtagatgagctcaaataagcaaatcca 21157915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 262
Target Start/End: Complemental strand, 40709514 - 40709475
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaata 262  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  40709514 tgcttatttataagctgtttctataacaaaagataaaata 40709475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 43824270 - 43824337
Alignment:
Q  274 tttttatataaggtgtaagcttttttcgtaagctattctagagaggttatggaaattagctgaaaaca 341  Q
    |||| ||||||| | ||||||||||||||||| ||| || || || |||||||||| |||||||||||    
T  43824270 ttttcatataagttataagcttttttcgtaagttatcctggaaagcttatggaaataagctgaaaaca 43824337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 437
Target Start/End: Original strand, 1017122 - 1017176
Alignment:
Q  383 caaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaa 437  Q
    |||||||||||||||||| || ||| ||||||| ||||||||||||  |||||||    
T  1017122 caaacagtctcacaagtgtttatgtcagtagattagctcaaataagtcaatccaa 1017176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 263
Target Start/End: Original strand, 6364087 - 6364125
Alignment:
Q  225 cttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  6364087 cttatgtataagctatttctataacaaaagataaaataa 6364125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 17125766 - 17125724
Alignment:
Q  221 attgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||| ||||||||||||| |||||||||||||| |||||||||    
T  17125766 attgtttatgtataagctatttttataacaaaatataaaataa 17125724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 447
Target Start/End: Complemental strand, 17975323 - 17975249
Alignment:
Q  373 taagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcctta 447  Q
    ||||||||  |||| ||| | ||||||| ||||||| |||||||||||||||||||  |||||||| || |||||    
T  17975323 taagctcttccaaatagtttgacaagtgtttgtgttggtagataagctcaaataagtcaatccaaacagccctta 17975249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 442
Target Start/End: Complemental strand, 22845657 - 22845623
Alignment:
Q  408 tagtagataagctcaaataagctaatccaaatagg 442  Q
    |||||||||||||||||||||| ||||||||||||    
T  22845657 tagtagataagctcaaataagccaatccaaatagg 22845623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 261
Target Start/End: Original strand, 47970254 - 47970292
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaat 261  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  47970254 tgcttatgtataagctatttctataacaaaagataaaat 47970292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 438
Target Start/End: Complemental strand, 56186869 - 56186819
Alignment:
Q  388 agtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    ||||||||||||| || ||||||||||||| ||| |||||| |||||||||    
T  56186869 agtctcacaagtgtttatgttagtagataaactcgaataagttaatccaaa 56186819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 438
Target Start/End: Complemental strand, 2977962 - 2977897
Alignment:
Q  373 taagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    |||||||||| ||||||||||||| ||| || ||  | ||||| |||||||||||| |||||||||    
T  2977962 taagctctcttaaacagtctcacacgtgcttatgccactagatcagctcaaataagttaatccaaa 2977897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 4191675 - 4191712
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaa 260  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  4191675 tgcttatgtataagctatttctataacaaaagataaaa 4191712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 444
Target Start/End: Complemental strand, 19394897 - 19394864
Alignment:
Q  411 tagataagctcaaataagctaatccaaataggcc 444  Q
    ||||||||||||||||||| ||||||||||||||    
T  19394897 tagataagctcaaataagccaatccaaataggcc 19394864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 441
Target Start/End: Complemental strand, 32421029 - 32420976
Alignment:
Q  388 agtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaatag 441  Q
    ||||||||||||| || || |||||| ||||||||||||||  |||||||||||    
T  32421029 agtctcacaagtgcttatgctagtaggtaagctcaaataagtcaatccaaatag 32420976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 44138494 - 44138535
Alignment:
Q  222 ttgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||||||||||||||| |||| || ||||||||||||    
T  44138494 ttgcttatgtataagctgtttctatagcagaagataaaataa 44138535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Complemental strand, 45104344 - 45104307
Alignment:
Q  411 tagataagctcaaataagctaatccaaataggccttaa 448  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  45104344 tagatatgctcaaataagctaatccaaacaggccttaa 45104307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 51044590 - 51044553
Alignment:
Q  226 ttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  51044590 ttatgtataagctatttctataacaaaagataaaataa 51044553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 424
Target Start/End: Original strand, 56007765 - 56007814
Alignment:
Q  375 agctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaa 424  Q
    |||||||||||||||||| |||||||||| ||  |||||||||| |||||    
T  56007765 agctctctcaaacagtcttacaagtgattatgccagtagataagttcaaa 56007814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 4471107 - 4471147
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||| |||| || ||||||||||||||||||||||||    
T  4471107 tgcttatgcataaactatttttataacaaaagataaaataa 4471147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 4798693 - 4798653
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||| |||| |||||||||||||||    
T  4798693 tgcttatgtataagctatttctatatcaaaagataaaataa 4798653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 25487679 - 25487639
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||| |||||||||| |||||||||    
T  25487679 tgcttatgtataagctatttctataacaaaaaataaaataa 25487639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 28623225 - 28623265
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||| | ||| ||||||||||||||||||||    
T  28623225 tgcttatgtataagttatttatataacaaaagataaaataa 28623265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 32066543 - 32066503
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||||||| ||  |||||||||||||||||||||||    
T  32066543 tgcttatgtataaactacttttataacaaaagataaaataa 32066503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 428
Target Start/End: Complemental strand, 33534156 - 33534100
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    ||||||||||||||| | ||||||||||  || ||| | ||||||||||||||||||    
T  33534156 ataagctctctcaaatactctcacaagtacttatgtcactagataagctcaaataag 33534100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 427
Target Start/End: Original strand, 50298609 - 50298653
Alignment:
Q  383 caaacagtctcacaagtgattgtgttagtagataagctcaaataa 427  Q
    |||||||||||||||||| || ||| |||||||||||| ||||||    
T  50298609 caaacagtctcacaagtgcttatgtcagtagataagctaaaataa 50298653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 46)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 378 - 450
Target Start/End: Complemental strand, 28803511 - 28803439
Alignment:
Q  378 tctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggccttaaat 450  Q
    ||||||||||||||||||| ||| || ||   |||||||||||||||||||  ||||||||||||||||||||    
T  28803511 tctctcaaacagtctcacatgtgcttatgccggtagataagctcaaataagtcaatccaaataggccttaaat 28803439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 438
Target Start/End: Original strand, 11513979 - 11514045
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    ||||||||||| ||||||||||||||||| || || |||||||||| ||||||||| | ||||||||    
T  11513979 ataagctctctaaaacagtctcacaagtgcttatgctagtagataatctcaaataaaccaatccaaa 11514045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 326
Target Start/End: Original strand, 10143108 - 10143211
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaa-taagtcagaccgttttttatataaggtgtaagcttttttcgtaagctattctagagaggtt 321  Q
    |||||||||||||| | ||| ||||||||||||||||| ||||||| || | |||||||||||| | |||| ||||||| ||||||||  | ||||| ||    
T  10143108 tgcttatgtataagttatttctataacaaaagataaaattaagtcaaactg-tttttatataagctataagtttttttcataagctatcatggagagttt 10143206  T
Q  322 atgga 326  Q
    |||||    
T  10143207 atgga 10143211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 383 - 438
Target Start/End: Original strand, 41170704 - 41170759
Alignment:
Q  383 caaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    |||| ||||||||||||| || ||||||||||||| ||||||||||| ||||||||    
T  41170704 caaatagtctcacaagtgtttatgttagtagataaactcaaataagccaatccaaa 41170759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 438
Target Start/End: Original strand, 11063292 - 11063342
Alignment:
Q  388 agtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    |||||| ||| || ||||||||||||||||| |||||||||||||||||||    
T  11063292 agtctcgcaaatgcttgtgttagtagataagttcaaataagctaatccaaa 11063342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 438
Target Start/End: Original strand, 22878181 - 22878247
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    ||||| |||| |||||||||||||||||| || ||| ||| ||||||||||||||||  ||||||||    
T  22878181 ataaggtctcccaaacagtctcacaagtgcttatgtcagtggataagctcaaataagtcaatccaaa 22878247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 446
Target Start/End: Original strand, 37474848 - 37474921
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcctt 446  Q
    ||||||||||||||| ||||||| ||||| || ||| | ||||||| |||  |||||||||||||||||||||||    
T  37474848 ataagctctctcaaagagtctcataagtgtttatgtaa-tagataaactcggataagctaatccaaataggcctt 37474921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 438
Target Start/End: Complemental strand, 43456743 - 43456628
Alignment:
Q  321 tatggaaattagctgaaaacagtttacgaagatgttgtgagctgtttttatataagctctctcaaacagtctcacaagtgattgtgttagtagataagct 420  Q
    ||||||||| |||||||||||||||| | | ||||  |||| ||||||   | ||||||| ||||||||||| ||||||| || ||| |||| ||||| |    
T  43456743 tatggaaataagctgaaaacagtttatggacatgtcatgagttgtttt--cacaagctctttcaaacagtcttacaagtgtttatgtgagtaaataagtt 43456646  T
Q  421 caaataagctaatccaaa 438  Q
    ||||||||  ||||||||    
T  43456645 caaataagtaaatccaaa 43456628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 5045288 - 5045251
Alignment:
Q  226 ttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  5045288 ttatgtataagctatttttataacaaaagataaaataa 5045251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 5133707 - 5133748
Alignment:
Q  222 ttgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  5133707 ttgcttatgtataagctatttctataacaaaagataaaataa 5133748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 426
Target Start/End: Original strand, 13866962 - 13867015
Alignment:
Q  373 taagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaata 426  Q
    |||| ||||||||||||||||||||||| || ||  ||||||||||||||||||    
T  13866962 taagttctctcaaacagtctcacaagtgtttatggcagtagataagctcaaata 13867015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 18962172 - 18962132
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  18962172 tgcttatgtattagctatttttataacaaaagataaaataa 18962132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 263
Target Start/End: Complemental strand, 5998839 - 5998796
Alignment:
Q  220 aattgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||    
T  5998839 aattgtttatatataagctatttttataacaaaagataaaataa 5998796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 447
Target Start/End: Original strand, 6547972 - 6548047
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcctta 447  Q
    |||||||| |||||||||||||||||||  || || |||||||||||||  ||||||  |||||||| || |||||    
T  6547972 ataagctccctcaaacagtctcacaagttcttatgctagtagataagcttgaataagtcaatccaaacagacctta 6548047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 446
Target Start/End: Complemental strand, 15370299 - 15370236
Alignment:
Q  383 caaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcctt 446  Q
    ||||||||||||||| || || ||  ||||||||||||||||||||  |||||||| |||||||    
T  15370299 caaacagtctcacaaatgcttatgccagtagataagctcaaataagtcaatccaaacaggcctt 15370236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 32821746 - 32821785
Alignment:
Q  224 gcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||| ||||||| ||||||||||||||||||||||||    
T  32821746 gcttatgaataagctatttttataacaaaagataaaataa 32821785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 438
Target Start/End: Original strand, 40944007 - 40944062
Alignment:
Q  383 caaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    |||||||| ||||||||| || ||| | ||||||| ||||||||||||||||||||    
T  40944007 caaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 40944062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 41817155 - 41817222
Alignment:
Q  274 tttttatataaggtgtaagcttttttcgtaagctattctagagaggttatggaaattagctgaaaaca 341  Q
    ||||| ||||| ||||||||| ||||| ||| |||| || ||||| |||||||||| |||||||||||    
T  41817155 tttttgtataatgtgtaagctattttcataaactatcctggagagcttatggaaataagctgaaaaca 41817222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 262
Target Start/End: Original strand, 44443256 - 44443295
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaata 262  Q
    |||||||||||||||| ||||||| |||||||||||||||    
T  44443256 tgcttatgtataagctatttttattacaaaagataaaata 44443295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 447
Target Start/End: Complemental strand, 3078594 - 3078520
Alignment:
Q  373 taagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcctta 447  Q
    ||||||||  |||| ||| | ||||||| ||||||| |||||||||||||||||||  |||||||| || |||||    
T  3078594 taagctcttccaaatagtttgacaagtgtttgtgttggtagataagctcaaataagtcaatccaaacagccctta 3078520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 438
Target Start/End: Original strand, 4350773 - 4350839
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    ||||| ||||||||||| ||||  ||||| || ||| |||||| |||||||||||||| ||||||||    
T  4350773 ataagttctctcaaacaatctcttaagtgcttatgtcagtagagaagctcaaataagccaatccaaa 4350839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 25609894 - 25609936
Alignment:
Q  387 cagtctcacaagtgattgtgttagtagataagctcaaataagc 429  Q
    |||||||||||||  || |||||||||||||||||||||||||    
T  25609894 cagtctcacaagttcttatgttagtagataagctcaaataagc 25609936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 436
Target Start/End: Original strand, 33981220 - 33981270
Alignment:
Q  386 acagtctcacaagtgattgtgttagtagataagctcaaataagctaatcca 436  Q
    ||||||||||||||| ||  | |||||| ||||||||||||||||||||||    
T  33981220 acagtctcacaagtgcttaagctagtaggtaagctcaaataagctaatcca 33981270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 40158816 - 40158870
Alignment:
Q  387 cagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaatag 441  Q
    |||||||||||||  || ||| |||||||| |||||||||||| |||||||||||    
T  40158816 cagtctcacaagttcttatgtcagtagatatgctcaaataagccaatccaaatag 40158870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 8820405 - 8820368
Alignment:
Q  225 cttatgtataagctgtttttataacaaaagataaaata 262  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  8820405 cttatgtataagctatttatataacaaaagataaaata 8820368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 428
Target Start/End: Original strand, 9996820 - 9996877
Alignment:
Q  371 tataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    ||||||||||| ||| |||||||||||||  || || |||| ||||||||||||||||    
T  9996820 tataagctctcccaagcagtctcacaagtacttatgctagttgataagctcaaataag 9996877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 438
Target Start/End: Complemental strand, 30990393 - 30990360
Alignment:
Q  405 tgttagtagataagctcaaataagctaatccaaa 438  Q
    ||||||||||||||||||||||||| ||||||||    
T  30990393 tgttagtagataagctcaaataagccaatccaaa 30990360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 448
Target Start/End: Complemental strand, 32364719 - 32364642
Alignment:
Q  371 tataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggccttaa 448  Q
    ||||||||||| |||||| | |||||| || || || |||||||||  ||||||||||  |||||||||||| |||||    
T  32364719 tataagctctcccaaacaatttcacaaatgcttatgatagtagatattctcaaataagtcaatccaaatagggcttaa 32364642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 260
Target Start/End: Complemental strand, 41033084 - 41033047
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaa 260  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  41033084 tgcttatgtataagctatttctataacaaaagataaaa 41033047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 440
Target Start/End: Complemental strand, 42852678 - 42852621
Alignment:
Q  383 caaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaata 440  Q
    |||||||||||||||||| || ||  || ||||||| |||||||||| ||||||||||    
T  42852678 caaacagtctcacaagtgcttatgccagcagataagttcaaataagcaaatccaaata 42852621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 44606219 - 44606182
Alignment:
Q  226 ttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  44606219 ttatgtataagctattttcataacaaaagataaaataa 44606182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 1647251 - 1647291
Alignment:
Q  302 taagctattctagagaggttatggaaattagctgaaaacag 342  Q
    ||||||||| ||||||| |||||||||| ||||||||||||    
T  1647251 taagctattatagagagcttatggaaataagctgaaaacag 1647291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 3102629 - 3102669
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| |||||||| ||||| |||||||||    
T  3102629 tgcttatgtataagctatttttatagcaaaatataaaataa 3102669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 4026753 - 4026793
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||| |||||||| |||||||| |||||||||||||||    
T  4026753 tgcttatctataagctatttttatagcaaaagataaaataa 4026793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 443
Target Start/End: Complemental strand, 5045148 - 5045084
Alignment:
Q  379 ctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggc 443  Q
    |||||||||||||||||||||| |  ||| |||| ||||| ||||||| |||||| |||| ||||    
T  5045148 ctctcaaacagtctcacaagtgttgttgtcagtaaataagttcaaatacgctaattcaaacaggc 5045084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 428
Target Start/End: Original strand, 9478382 - 9478438
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    |||| ||||||||||||||| |||||||  || |||| ||||||||| |||||||||    
T  9478382 ataaactctctcaaacagtcacacaagtacttatgttggtagataagttcaaataag 9478438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 10190215 - 10190255
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||||||| || ||||||||||||| ||||||||||    
T  10190215 tgcttatgtataaactatttttataacaaaggataaaataa 10190255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 23747242 - 23747278
Alignment:
Q  225 cttatgtataagctgtttttataacaaaagataaaat 261  Q
    |||||||||||||| |||||||| |||||||||||||    
T  23747242 cttatgtataagctatttttatatcaaaagataaaat 23747278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 25609732 - 25609772
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||| ||||| ||||||||||||||    
T  25609732 tgcttatgtataagctatttctataagaaaagataaaataa 25609772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 28902013 - 28902053
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||||||||||| ||| ||||||||    
T  28902013 tgcttatgtataagctatttttataacataagttaaaataa 28902053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 30990503 - 30990463
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||| ||||||||| ||||||||||    
T  30990503 tgcttatgtataagctctttctataacaaatgataaaataa 30990463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 32098442 - 32098402
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||| |||||||| ||| ||||||||||||||||||||    
T  32098442 tgcttatatataagctatttctataacaaaagataaaataa 32098402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 341
Target Start/End: Original strand, 32694151 - 32694266
Alignment:
Q  226 ttatgtataagctgtttttataacaaaagataaaataag-tcagaccgttttttatataaggtgtaagcttttttcgtaagctattctagagaggttatg 324  Q
    ||||||||||||| ||| |||| |||||||||||||||  ||||||  |||| |||||||  | |||| | ||| | |||||||| ||||| || || ||    
T  32694151 ttatgtataagctatttctatatcaaaagataaaataaaatcagactatttt-tatataatttataagttgtttgcataagctatcctagatagattgtg 32694249  T
Q  325 gaaattagctgaaaaca 341  Q
    ||||| |||||||||||    
T  32694250 gaaataagctgaaaaca 32694266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 34055035 - 34054995
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||| ||| ||| ||||||||||||||||||||    
T  34055035 tgcttatgtataggctatttctataacaaaagataaaataa 34054995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 40759259 - 40759315
Alignment:
Q  388 agtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcc 444  Q
    ||||||||||||| || ||| | ||||||||||||||||||  |||||||| |||||    
T  40759259 agtctcacaagtgcttatgtcaatagataagctcaaataaggcaatccaaacaggcc 40759315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 428
Target Start/End: Original strand, 43141955 - 43142011
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    |||||| || |||||| || |||||| || || ||||||||||||||||||||||||    
T  43141955 ataagcgctgtcaaactgtttcacaattgcttatgttagtagataagctcaaataag 43142011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 443
Target Start/End: Complemental strand, 2460138 - 2460067
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggc 443  Q
    ||||||||||||||||||||||||||||  || || ||||  ||||||||||||||| ||||||||| ||||    
T  2460138 ataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataagttaatccaaacaggc 2460067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 438
Target Start/End: Complemental strand, 35070448 - 35070388
Alignment:
Q  378 tctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    |||| ||||||||| |||||||| || ||||||||||||||||||||||||  ||||||||    
T  35070448 tctcccaaacagtcccacaagtgcttatgttagtagataagctcaaataagaaaatccaaa 35070388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 262
Target Start/End: Original strand, 33416321 - 33416360
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaata 262  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  33416321 tgcttatgtataagctatttttataacaaaagataaaata 33416360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 441
Target Start/End: Complemental strand, 24974015 - 24973945
Alignment:
Q  371 tataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaatag 441  Q
    ||||||||||  |||||| ||| ||||||| || ||| || ||||||| ||||||||||||||||||||||    
T  24974015 tataagctctaccaaacaatcttacaagtgcttatgtcagcagataagttcaaataagctaatccaaatag 24973945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 418
Target Start/End: Complemental strand, 34538273 - 34538159
Alignment:
Q  302 taagctattctagagaggttatggaaattagctgaaaacagtttacgaagatgttgtgagctgtttttatataagctctctcaaacagtctcacaagtga 401  Q
    |||||||| |||||||| || |  |||| ||||||||| |||||| | | |||| || |||||||||||||  || ||||||||| |||||||||||||     
T  34538273 taagctatcctagagagtttgtataaataagctgaaaatagtttatggacatgtcgtaagctgtttttata--agatctctcaaatagtctcacaagtgc 34538176  T
Q  402 ttgtgttagtagataag 418  Q
    || | | ||||||||||    
T  34538175 ttatatgagtagataag 34538159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 427
Target Start/End: Complemental strand, 8420185 - 8420129
Alignment:
Q  371 tataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataa 427  Q
    ||||||||||| | |||||||||||||||| || ||| | |||||||||||||||||    
T  8420185 tataagctctcactaacagtctcacaagtgtttatgtcaatagataagctcaaataa 8420129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 12111066 - 12111122
Alignment:
Q  388 agtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcc 444  Q
    |||||| |||||| || || |||||||||||||||||||||  ||||||||||||||    
T  12111066 agtctcgcaagtgcttatgctagtagataagctcaaataagtcaatccaaataggcc 12111122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 20370839 - 20370875
Alignment:
Q  227 tatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||| ||||||||||||||||||||||||    
T  20370839 tatgtataagctatttttataacaaaagataaaataa 20370875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 33259752 - 33259788
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaa 259  Q
    |||||||||||||||| ||||||||||||||||||||    
T  33259752 tgcttatgtataagctatttttataacaaaagataaa 33259788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 341
Target Start/End: Complemental strand, 281974 - 281864
Alignment:
Q  231 tataagctgtttttataacaaaagataaaataa-gtcagaccgttttttatataaggtgtaagcttttttcgtaagctattctagagaggttatggaaat 329  Q
    |||||||| ||  |||||||||||||||||||| |||| ||   |||| ||||||| | |||||| | ||| |||||||| |||||||| | ||||||||    
T  281974 tataagctattcctataacaaaagataaaataaagtca-acttgttttcatataagctataagctgtgttcataagctatcctagagagctcatggaaat 281876  T
Q  330 tagctgaaaaca 341  Q
     |||||||||||    
T  281875 aagctgaaaaca 281864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 438
Target Start/End: Original strand, 1432221 - 1432288
Alignment:
Q  371 tataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    ||||| |||||||||||||||| |||| || || ||| |||||||||||| |||||| | ||||||||    
T  1432221 tataaactctctcaaacagtctaacaattgcttatgtgagtagataagctaaaataaaccaatccaaa 1432288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 428
Target Start/End: Complemental strand, 9667955 - 9667916
Alignment:
Q  389 gtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    |||||||||||| ||||||||| |||||||||||||||||    
T  9667955 gtctcacaagtgcttgtgttaggagataagctcaaataag 9667916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 438
Target Start/End: Original strand, 27894116 - 27894182
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaa 438  Q
    ||||||||  ||||||||||||||||||  || |||  |||| ||||||||||| ||||||||||||    
T  27894116 ataagctcgttcaaacagtctcacaagtacttatgtccgtaggtaagctcaaatgagctaatccaaa 27894182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 444
Target Start/End: Original strand, 2457035 - 2457096
Alignment:
Q  383 caaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcc 444  Q
    |||||||||| ||||||| || |||  |||||||| ||||||||||| |||||||| |||||    
T  2457035 caaacagtcttacaagtgcttatgtcggtagataatctcaaataagccaatccaaacaggcc 2457096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 3171564 - 3171527
Alignment:
Q  224 gcttatgtataagctgtttttataacaaaagataaaat 261  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  3171564 gcttatgcataagctatttttataacaaaagataaaat 3171527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 339
Target Start/End: Original strand, 4006650 - 4006766
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa-gtcagaccgttttttatataaggtgtaagcttttttcgtaagctattctagagaggtt 321  Q
    |||||||| ||||| | ||| ||||||||| |||||||||| |||| |  ||||| |||||||| | |||| | ||||| |||||||| |  ||||||||    
T  4006650 tgcttatgcataagatatttctataacaaatgataaaataaagtcaaattgtttt-tatataagctataagttgttttcataagctatccctgagaggtt 4006748  T
Q  322 atggaaattagctgaaaa 339  Q
    ||| |||| |||||||||    
T  4006749 atgaaaataagctgaaaa 4006766  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 260
Target Start/End: Complemental strand, 4247768 - 4247731
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaa 260  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  4247768 tgcttatgtataagctatttctataacaaaagataaaa 4247731  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Complemental strand, 10353746 - 10353705
Alignment:
Q  374 aagctctctcaaacagtctcacaagtgattgtgttagtagat 415  Q
    |||||||| |||||||||||||||||| || |||||||||||    
T  10353746 aagctctcccaaacagtctcacaagtgcttatgttagtagat 10353705  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 29957977 - 29957940
Alignment:
Q  302 taagctattctagagaggttatggaaattagctgaaaa 339  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  29957977 taagctattctagagagcttatggaaataagctgaaaa 29957940  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 31461614 - 31461651
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaa 260  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  31461614 tgcttatgtataagctatttctataacaaaagataaaa 31461651  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 31624195 - 31624236
Alignment:
Q  224 gcttatgtataagctgtttttataacaaaagataaaataagt 265  Q
    |||| |||||||||| ||| ||||||||||||||||||||||    
T  31624195 gcttgtgtataagctatttctataacaaaagataaaataagt 31624236  T

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Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 445
Target Start/End: Complemental strand, 32171370 - 32171297
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcct 445  Q
    |||||||||||||||||||||| |||||| || ||| | ||  |||||| |||||||  |||||||| ||||||    
T  32171370 ataagctctctcaaacagtctcgcaagtgcttatgtcaatacttaagctgaaataagacaatccaaacaggcct 32171297  T

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Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 2034572 - 2034533
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  2034572 tgcttatgtataagctgtttttacaac-aaagataaaataa 2034533  T

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Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 2514638 - 2514678
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||| ||||| ||||||||||||||    
T  2514638 tgcttatgtataagctatttctataataaaagataaaataa 2514678  T

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Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 2727990 - 2727954
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaa 259  Q
    ||||||||||||||||| || ||||||||||||||||    
T  2727990 tgcttatgtataagctgcttctataacaaaagataaa 2727954  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 3155255 - 3155311
Alignment:
Q  369 tatataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaat 425  Q
    |||||||||||| |||||  ||||| ||||||||| |||  ||||||||||||||||    
T  3155255 tatataagctctttcaaatggtctctcaagtgattatgtctgtagataagctcaaat 3155311  T

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Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 428
Target Start/End: Original strand, 3738196 - 3738240
Alignment:
Q  384 aaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    ||||||||||||||||| || || |||||||||| ||||||||||    
T  3738196 aaacagtctcacaagtgcttatgctagtagataaactcaaataag 3738240  T

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Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 428
Target Start/End: Original strand, 6742910 - 6742950
Alignment:
Q  388 agtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    |||||||||||||||| || |||||| ||||||||||||||    
T  6742910 agtctcacaagtgattatgctagtaggtaagctcaaataag 6742950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 10452494 - 10452454
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||| |||||||||| |||||||||    
T  10452494 tgcttatgtataagctatttctataacaaaatataaaataa 10452454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 444
Target Start/End: Original strand, 12811391 - 12811419
Alignment:
Q  416 aagctcaaataagctaatccaaataggcc 444  Q
    |||||||||||||||||||||||||||||    
T  12811391 aagctcaaataagctaatccaaataggcc 12811419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 28621244 - 28621204
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||| ||||||  ||||||||||||||||||||||||||    
T  28621244 tgcttaggtataaattgtttttataacaaaagataaaataa 28621204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 29274363 - 29274323
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||| |||| |||||||||||||||    
T  29274363 tgcttatgtataagctatttctatagcaaaagataaaataa 29274323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 29940732 - 29940772
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||| ||||||||| ||| ||||||||||||||||||||    
T  29940732 tgcttaagtataagctttttctataacaaaagataaaataa 29940772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 428
Target Start/End: Original strand, 30865566 - 30865622
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    ||||||||||| |||| |||| ||||||| || |||||  |||||||||||||||||    
T  30865566 ataagctctcttaaactgtctaacaagtgtttatgttaacagataagctcaaataag 30865622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 428
Target Start/End: Original strand, 32917280 - 32917336
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    |||||||||| |||||||||||||||||| || |  |||||| ||||||| ||||||    
T  32917280 ataagctctcccaaacagtctcacaagtgtttattctagtaggtaagctctaataag 32917336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 400
Target Start/End: Original strand, 32997591 - 32997627
Alignment:
Q  364 gtttttatataagctctctcaaacagtctcacaagtg 400  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  32997591 gtttttttataagctctctcaaacggtctcacaagtg 32997627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 33068695 - 33068655
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||| | ||| ||||||||||||||||||||    
T  33068695 tgcttatgtataagttatttctataacaaaagataaaataa 33068655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 428
Target Start/End: Original strand, 6893 - 6949
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataag 428  Q
    |||||||||| |||||||||||||||||| || || |||||||||| ||||||||||    
T  6893 ataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataag 6949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 258
Target Start/End: Complemental strand, 35930 - 35895
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataa 258  Q
    ||||||||||||||||||||||||||||||||||||    
T  35930 tgcttatgtataagctgtttttataacaaaagataa 35895  T

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Target: scaffold0110; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 35819 - 35775
Alignment:
Q  372 ataagctctctcaaacagtctcacaagtgattgtgttagtagata 416  Q
    ||||||||||||||||||||| || ||||||| ||| ||||||||    
T  35819 ataagctctctcaaacagtctaacgagtgattatgtcagtagata 35775  T

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Target: scaffold0050 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 450
Target Start/End: Original strand, 58865 - 58903
Alignment:
Q  412 agataagctcaaataagctaatccaaataggccttaaat 450  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  58865 agataagctcaaataagctaatccaaataggccctaaat 58903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 376 - 445
Target Start/End: Complemental strand, 9761 - 9692
Alignment:
Q  376 gctctctcaaacagtctcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcct 445  Q
    |||||| |||||||||||||||||  || ||||||||||||| |||||||||   |||| ||||||||||    
T  9761 gctctcccaaacagtctcacaagtatttatgttagtagataaactcaaataaatcaatctaaataggcct 9692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 1208 - 1168
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  1208 tgcttatgtataagctatttctataacaaaagataaaataa 1168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 2767 - 2807
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaaataa 263  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  2767 tgcttatgtataagctatttctataacaaaagataaaataa 2807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 159940 - 159888
Alignment:
Q  392 tcacaagtgattgtgttagtagataagctcaaataagctaatccaaataggcc 444  Q
    ||||||||| || | ||||||||||||||||||||||| |||||||| |||||    
T  159940 tcacaagtgtttatattagtagataagctcaaataagccaatccaaacaggcc 159888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 3840 - 3876
Alignment:
Q  223 tgcttatgtataagctgtttttataacaaaagataaa 259  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  3840 tgcttatgtgtaagctatttttataacaaaagataaa 3876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 63411 - 63379
Alignment:
Q  231 tataagctgtttttataacaaaagataaaataa 263  Q
    |||||||| ||||||||||||||||||||||||    
T  63411 tataagctatttttataacaaaagataaaataa 63379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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