View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14504_low_50 (Length: 259)
Name: NF14504_low_50
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_50 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 40513671 - 40513438
Alignment:
| Q |
11 |
gagtattagtattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttctt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40513671 |
gagtattagtattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttctt |
40513572 |
T |
|
| Q |
111 |
ttatttgccagtggttagagaagaagtttgcattgatattggaaaaactcttgaagttattctcacagttgttagatcatttggagatttgttttacata |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40513571 |
ttatttgccagtggttagagaagaagtttgcattgatattggaaaaactcttgaagttattctcacagttgttagatcatttggagatttgttttacata |
40513472 |
T |
|
| Q |
211 |
gttcagatttgtatgaagtttcgtacagcctatg |
244 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
40513471 |
gttcagatttgtatgaagtttcgtacagcttatg |
40513438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 21611600 - 21611734
Alignment:
| Q |
20 |
tattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttatttgcc |
119 |
Q |
| |
|
|||| ||||||||||||||| ||| || | ||||||||||| || || |||||||||||| ||||||||||||||||||| || |||||||||||||| |
|
|
| T |
21611600 |
tatttgatcctaggggacaaaccattcaccaatggaacaagattttcttggtagcatgtttaatttctttgtttgtggatcctctcttcttttatttgcc |
21611699 |
T |
|
| Q |
120 |
agtggttagagaagaagtttgcattgatattggaa |
154 |
Q |
| |
|
| | ||| ||| ||||| |||||||||||||||| |
|
|
| T |
21611700 |
aatagttcaagatgaagtgtgcattgatattggaa |
21611734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 28261535 - 28261605
Alignment:
| Q |
52 |
tggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttatttgccagt |
122 |
Q |
| |
|
|||||||| ||||| |||| ||| ||||| |||| ||||||||||||||||| |||||||| || ||||| |
|
|
| T |
28261535 |
tggaacaaaatattcttagcagcttgtttgatttcattgtttgtggatccacttttcttttacttaccagt |
28261605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University