View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_low_51 (Length: 253)
Name: NF14504_low_51
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 3098418 - 3098579
Alignment:
| Q |
16 |
cctgtgttattatttttcaaaaacacatcaaattttgtccatagcatgagtaaagaggatggcttccttgtaaagataagatttgattgtgtactaattt |
115 |
Q |
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| T |
3098418 |
cctgtgttattatttttcaaaaacacatcaaattttgtccatagcatgagtaaagaggatcgcttccttgtaaagataagatttgattgtgtactaattt |
3098517 |
T |
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| Q |
116 |
cacctctaaatgctttccaacaatcatttagcagctgcaaatacaaagcagtcaccgtctaga |
178 |
Q |
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| T |
3098518 |
cacctctaaatgctttccaacaatcatttagcagctgc-aatacaaagcagtcaccgtctaga |
3098579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 3092335 - 3092490
Alignment:
| Q |
20 |
tgttattatttttcaaaaacacatcaaattttgtccatagcatgagtaaagaggatggcttccttgtaaagataagatttgattgtgtactaatttcacc |
119 |
Q |
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||||||||||||||||| ||| ||| | |||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
3092335 |
tgttattatttttcaaagacagttcatcctctgtccatattgtgactaaagaggatcgcttccttgtaaagataagatttgattgtgtact---ttcact |
3092431 |
T |
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| Q |
120 |
tctaaatgctttccaacaatcatttagcagctgcaaatacaaagcagtcaccgtctaga |
178 |
Q |
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||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| |
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| T |
3092432 |
tctgaatgctttccaacaatcatttagcagctgcaaaaacaaagcaatcaccatctaga |
3092490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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