View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14504_low_52 (Length: 247)

Name: NF14504_low_52
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14504_low_52
NF14504_low_52
[»] chr7 (1 HSPs)
chr7 (1-231)||(39601926-39602153)
[»] chr2 (5 HSPs)
chr2 (23-231)||(1401549-1401754)
chr2 (93-231)||(38415164-38415300)
chr2 (93-231)||(9010790-9010927)
chr2 (179-222)||(34589464-34589507)
chr2 (44-81)||(1401500-1401537)
[»] chr4 (2 HSPs)
chr4 (23-231)||(21826048-21826253)
chr4 (130-231)||(19108858-19108955)
[»] chr3 (1 HSPs)
chr3 (95-231)||(11197542-11197677)
[»] chr5 (1 HSPs)
chr5 (179-222)||(617571-617614)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 39601926 - 39602153
Alignment:
Q  1 ataataatgtctcattcaagagaataatgtctcatacaagagaaaagtactctcaaaaatacataaatatagtttgcaaataactgaacaaatcaaagta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  39601926 ataataatgtctcattcaagagaataatgtctcatacaagagaaaagtactctcaaaaatacataaatataatttgcaaataactgaaccaatcaaagta 39602025  T
Q  101 aaactatccattacctaagaaaaatatatatataataatgaatctaatactttccaaatatctaaattgttgttactatcccctccttcattgacattat 200  Q
    |||||||||||||||||| |||||||   |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39602026 aaactatccattacctaaaaaaaata---atataataatgaatctaatactttccaaatctctaaattgttgttactatcccctccttcattgacattat 39602122  T
Q  201 cattctctcatgctcttgacatgttcttgag 231  Q
    |||||||||||||||||||||||||||||||    
T  39602123 cattctctcatgctcttgacatgttcttgag 39602153  T

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Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 23 - 231
Target Start/End: Original strand, 1401549 - 1401754
Alignment:
Q  23 aataatgtctcatacaagagaaaagtactctcaaaaatacataaatatagtttgcaaataactgaacaaatcaaagtaaaactatccattacctaagaaa 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||    
T  1401549 aataatgtctcatacaagagaaaagtactctcaaaaatacataaatatagtttgcaaataactgaataaatcaaagtaaaaccatccattacctaaaaaa 1401648  T
Q  123 aatatatatataataatgaatctaatactttccaaatatctaaattgttgttactatcccctccttcattgacattatcattctctcatgctcttgacat 222  Q
    ||   | |||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1401649 aa---aaatatgataatgaatctaaaactttccaaatctctaaattgttgttactatcccctccttcattgacattatcattctctcatgctcttgacat 1401745  T
Q  223 gttcttgag 231  Q
    |||||||||    
T  1401746 gttcttgag 1401754  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 38415300 - 38415164
Alignment:
Q  93 tcaaagtaaaactatccattacctaagaaaaatatatatataataatgaatctaatactttccaaatatctaaattgttgttactatcccctccttcatt 192  Q
    |||||||| ||||||||||||||||| || |||| |   |||||||  ||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||    
T  38415300 tcaaagtacaactatccattacctaaaaataataaaatgataataa--aatctaaaacttttcaaatctctaaattgttgttactatccactccttcatt 38415203  T
Q  193 gacattatcattctctcatgctcttgacatgttcttgag 231  Q
    | ||| |||||||||  ||||||||||||||||||||||    
T  38415202 gccatcatcattctcagatgctcttgacatgttcttgag 38415164  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 9010927 - 9010790
Alignment:
Q  93 tcaaagtaaaactatccattacctaagaaaaatatatatataataatgaatctaatactttccaaatatctaaattgttgttactat--cccctccttca 190  Q
    |||||||| ||||||||||||||||| || |||| |   || ||||| ||||||| ||||| ||||| |||||||||||||||||||  || ||||||||    
T  9010927 tcaaagtacaactatccattacctaaaaataataaa---atgataataaatctaaaacttttcaaatctctaaattgttgttactatggccactccttca 9010831  T
Q  191 ttgacattatcattctctcatgctcttgacatgttcttgag 231  Q
    ||| |||||||||||||  ||||||||||||||||||||||    
T  9010830 ttgccattatcattctcagatgctcttgacatgttcttgag 9010790  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 34589507 - 34589464
Alignment:
Q  179 tcccctccttcattgacattatcattctctcatgctcttgacat 222  Q
    ||||||||||||||| |||||||||| ||||| |||||||||||    
T  34589507 tcccctccttcattgtcattatcattatctcaagctcttgacat 34589464  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 1401500 - 1401537
Alignment:
Q  44 aaagtactctcaaaaatacataaatatagtttgcaaat 81  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  1401500 aaagtgctcttaaaaatacataaatatagtttgcaaat 1401537  T

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Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 23 - 231
Target Start/End: Original strand, 21826048 - 21826253
Alignment:
Q  23 aataatgtctcatacaagagaaaagtactctcaaaaatacataaatatagtttgcaaataactgaacaaatcaaagtaaaactatccattacctaagaaa 122  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||| ||     
T  21826048 aataatgtctcattcaatagaaaagtactcttaaaaatacataaatatactttgcaaataactgaacaaatcaaagtaaaactatccggtacctaaaaat 21826147  T
Q  123 aatatatatataataatgaatctaatactttccaaatatctaaattgttgttactatcccctccttcattgacattatcattctctcatgctcttgacat 222  Q
    ||||   | || ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21826148 aata---agatgataatgaatctaaaactttccaaatctctaaattgttgttactatcccctccttcattgacattatcattctctcatgctcttgacat 21826244  T
Q  223 gttcttgag 231  Q
    |||||||||    
T  21826245 gttcttgag 21826253  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 19108858 - 19108955
Alignment:
Q  130 atataataatgaatctaatactttccaaatatctaaattgttgttactatcccctccttcattgacattatcattctctcatgctcttgacatgttcttg 229  Q
    |||| ||||||||||||| ||||||||||| |||||||||||| |||||||||||||    ||| |||||||||||||| |||| ||||| ||||| |||    
T  19108858 atatgataatgaatctaaaactttccaaatctctaaattgttgctactatcccctcc----ttgccattatcattctcttatgcacttgatatgttattg 19108953  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 231
Target Start/End: Original strand, 11197542 - 11197677
Alignment:
Q  95 aaagtaaaactatccattacctaagaaaaatatatatataataatgaatctaatactttccaaatatctaaattgttgttactatcccctccttcattga 194  Q
    |||||||||||| ||||||||||| || |||||  |||  ||||| ||||||| ||||||||| | || |||||  ||||| | |||||||||||||||     
T  11197542 aaagtaaaactaaccattacctaataataatattaatacgataataaatctaaaactttccaa-tctccaaatttgtgttattgtcccctccttcattgt 11197640  T
Q  195 cattatcattctctcatgctcttgacatgttcttgag 231  Q
    |||||||||| ||||| ||||||||||| | ||||||    
T  11197641 cattatcattatctcaagctcttgacatatgcttgag 11197677  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 617571 - 617614
Alignment:
Q  179 tcccctccttcattgacattatcattctctcatgctcttgacat 222  Q
    ||||||||||||||| |||||||||| ||||| |||||||||||    
T  617571 tcccctccttcattgtcattatcattatctcaagctcttgacat 617614  T

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