View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14504_low_53 (Length: 245)

Name: NF14504_low_53
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14504_low_53
NF14504_low_53
[»] chr3 (24 HSPs)
chr3 (1-242)||(7750415-7750656)
chr3 (30-242)||(6590757-6590969)
chr3 (102-230)||(6721564-6721692)
chr3 (30-227)||(6266122-6266319)
chr3 (99-242)||(13270086-13270229)
chr3 (31-236)||(6882926-6883131)
chr3 (99-237)||(6900509-6900647)
chr3 (128-236)||(8568475-8568583)
chr3 (64-217)||(6259595-6259748)
chr3 (99-236)||(6142705-6142842)
chr3 (30-236)||(6917520-6917732)
chr3 (98-236)||(5250563-5250701)
chr3 (30-166)||(6245779-6245915)
chr3 (30-151)||(6169398-6169519)
chr3 (156-236)||(6479537-6479617)
chr3 (172-236)||(8455048-8455112)
chr3 (105-236)||(6448286-6448417)
chr3 (156-236)||(8590123-8590203)
chr3 (184-230)||(6519745-6519791)
chr3 (156-226)||(6553993-6554063)
chr3 (156-226)||(6736394-6736464)
chr3 (183-236)||(4388519-4388572)
chr3 (183-230)||(5281084-5281131)
chr3 (172-236)||(6947663-6947727)
[»] chr1 (1 HSPs)
chr1 (103-230)||(35139890-35140017)
[»] scaffold0425 (1 HSPs)
scaffold0425 (184-226)||(7060-7102)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 7750656 - 7750415
Alignment:
Q  1 ctgcacctttgatggataaatctgcggcgtatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttacagtgaaacctttgt 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7750656 ctgcacctttgatggataaatctgcggtgtatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttacagtgaaacctttgt 7750557  T
Q  101 acccataatcagtatagtgggtgtgattgggatgggtaagacaaccattgcccgacttgtttacaacaaccacaagatacatgagcaatttgaacttaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7750556 acccataatcagtatagtgggtgtgattgggatgggtaagacaaccattgcccgacttgtttacaacgaccacaagatacatgagcaatttgaacttaaa 7750457  T
Q  201 gcttgggtctatgtttcaaaatcttttgatcttgttcatctc 242  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  7750456 gcttgggtctatgtttcagaatcttttgatcttgttcatctc 7750415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 30 - 242
Target Start/End: Original strand, 6590757 - 6590969
Alignment:
Q  30 tatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttacagtgaaacctttgtacccataatcagtatagtgggtgtgattg 129  Q
    |||||||| |||||||||| ||||||||| | | |||||||||||||||||||| ||||| | | |  ||||||||||||| ||||||||||| ||||||    
T  6590757 tatggtagagagcatgagaaagaggaaataattaaatttttactttcagacagtcacagtcacaaccatgtacccataatctgtatagtgggtatgattg 6590856  T
Q  130 ggatgggtaagacaaccattgcccgacttgtttacaacaaccacaagatacatgagcaatttgaacttaaagcttgggtctatgtttcaaaatcttttga 229  Q
    ||||||||||||||||| ||||||| |||||||||||  ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  6590857 ggatgggtaagacaacccttgcccggcttgtttacaaggaccacaagatactggagcaatttgaacttaaagcttgggtctatgtttcaaaatcttttga 6590956  T
Q  230 tcttgttcatctc 242  Q
    |||||||||||||    
T  6590957 tcttgttcatctc 6590969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 102 - 230
Target Start/End: Original strand, 6721564 - 6721692
Alignment:
Q  102 cccataatcagtatagtgggtgtgattgggatgggtaagacaaccattgcccgacttgtttacaacaaccacaagatacatgagcaatttgaacttaaag 201  Q
    ||||||||||||||||||||| |||||||||| |||||||||||| ||||||  |||||||||||  |||||| ||||   ||||||| |||||||||||    
T  6721564 cccataatcagtatagtgggtctgattgggataggtaagacaacccttgcccagcttgtttacaatgaccacaggatagtggagcaatatgaacttaaag 6721663  T
Q  202 cttgggtctatgtttcaaaatcttttgat 230  Q
    ||||||||||| ||||| |||||||||||    
T  6721664 cttgggtctatctttcagaatcttttgat 6721692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 227
Target Start/End: Complemental strand, 6266319 - 6266122
Alignment:
Q  30 tatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttacagtgaaacctttgtacccataatcagtatagtgggtgtgattg 129  Q
    |||||||| |||||||||  ||||||||||| ||| |||||||||||||| ||| || |||| | |    ||||||||||||||||||||||| |||  |    
T  6266319 tatggtagagagcatgagcaagaggaaatgattgattttttactttcagatagtcacggtgagaaccagctacccataatcagtatagtgggtctgacgg 6266220  T
Q  130 ggatgggtaagacaaccattgcccgacttgtttacaacaaccacaagatacatgagcaatttgaacttaaagcttgggtctatgtttcaaaatctttt 227  Q
    |||| ||||||||| || ||||||  |||||||||||  |||| | |||||| ||||| |||||| |||||||||||||| |||||||| || |||||    
T  6266219 ggattggtaagacagcccttgcccagcttgtttacaatgaccataggatacaggagcagtttgaatttaaagcttgggtccatgtttcagaaactttt 6266122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 99 - 242
Target Start/End: Original strand, 13270086 - 13270229
Alignment:
Q  99 gtacccataatcagtatagtgggtgtgattgggatgggtaagacaaccattgcccgacttgtttacaacaaccacaagatacatgagcaatttgaactta 198  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| || |||| |  |||||||||||  |||| | |||||| ||||| |||||| |||    
T  13270086 gtacccataatcagtatagtgggtctgatggggatgggtaagacagcccttgctcagcttgtttacaatgaccataggatacaggagcagtttgaattta 13270185  T
Q  199 aagcttgggtctatgtttcaaaatcttttgatcttgttcatctc 242  Q
    ||||||||||||||||| || ||||||||| || | ||||||||    
T  13270186 aagcttgggtctatgttccagaatcttttggtcgtcttcatctc 13270229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 236
Target Start/End: Complemental strand, 6883131 - 6882926
Alignment:
Q  31 atggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttacagtgaaacctttgtacccataatcagtatagtgggtgtgattgg 130  Q
    ||||||| |||||||||| ||||||| | | | ||||||||||||| |||| | ||||||| | | ||| ||||||||| |||||||||||| |||| ||    
T  6883131 atggtagagagcatgagaaagaggaattaattaaatttttactttctgacattcacagtgacaaccttgcacccataattagtatagtgggtctgatggg 6883032  T
Q  131 gatgggtaagacaaccattgcccgacttgtttacaacaaccacaagatacatgagcaatttgaacttaaagcttgggtctatgtttcaaaatcttttgat 230  Q
    |||||||||||||||  | ||||  |||||||||||  || ||| |||    ||||| ||||||||||||||||||||  ||||| || |||||||| ||    
T  6883031 gatgggtaagacaactctcgcccagcttgtttacaatgacgacatgatcacggagcattttgaacttaaagcttgggtgaatgttccagaatcttttaat 6882932  T
Q  231 cttgtt 236  Q
    ||||||    
T  6882931 cttgtt 6882926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 237
Target Start/End: Complemental strand, 6900647 - 6900509
Alignment:
Q  99 gtacccataatcagtatagtgggtgtgattgggatgggtaagacaaccattgcccgacttgtttacaacaaccacaagatacatgagcaatttgaactta 198  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| | ||||  ||||||||| |  || ||| |||    ||||| |||||| |||    
T  6900647 gtacccataatcagtgtagtgggtgtgattgggatgggtaagacaaccctcgcccagcttgtttactatgacgacatgatcgtggagcattttgaaatta 6900548  T
Q  199 aagcttgggtctatgtttcaaaatcttttgatcttgttc 237  Q
    ||||||||||| |||||||  ||||||||||||||||||    
T  6900547 aagcttgggtccatgtttcggaatcttttgatcttgttc 6900509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 8568475 - 8568583
Alignment:
Q  128 tgggatgggtaagacaaccattgcccgacttgtttacaacaaccacaagatacatgagcaatttgaacttaaagcttgggtctatgtttcaaaatctttt 227  Q
    ||||||||||||||| ||| |||| |||||||| |||||  ||||||||||| |  |||||||||||||||||||||||||| |||||||| ||||||||    
T  8568475 tgggatgggtaagaccacccttgctcgacttgtctacaatgaccacaagatagagaagcaatttgaacttaaagcttgggtccatgtttcagaatctttt 8568574  T
Q  228 gatcttgtt 236  Q
    ||| |||||    
T  8568575 gatgttgtt 8568583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 217
Target Start/End: Complemental strand, 6259748 - 6259595
Alignment:
Q  64 aatttttactttcagacagttacagt-gaaacctttgtacccataatcagtatagtgggtgtgattgggatgggtaagacaaccattgcccgacttgttt 162  Q
    ||||||||||||||||||||||||   ||||||   ||| |||||||||||||||||||| |||  ||||||||||||||| || ||||||  |||||||    
T  6259748 aatttttactttcagacagttacaaccgaaaccag-gtatccataatcagtatagtgggtctgacggggatgggtaagacagcccttgcccagcttgttt 6259650  T
Q  163 acaacaaccacaagatacatgagcaatttgaacttaaagcttgggtctatgtttc 217  Q
    ||||  |||| | |||||| ||||| |||||| |||||||||||||| |||||||    
T  6259649 acaatgaccataggatacaggagcagtttgaatttaaagcttgggtccatgtttc 6259595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 6142842 - 6142705
Alignment:
Q  99 gtacccataatcagtatagtgggtgtgattgggatgggtaagacaaccattgcccgacttgtttacaacaaccacaagatacatgagcaatttgaactta 198  Q
    |||||||||||||||||||| ||| |   |||||| |||||||||||| |||| |   || |||||||  |||||| |||||| ||||||||||||||||    
T  6142842 gtacccataatcagtatagtaggtcttcctgggataggtaagacaacccttgcgcagtttatttacaatgaccacaggatacaggagcaatttgaactta 6142743  T
Q  199 aagcttgggtctatgtttcaaaatcttttgatcttgtt 236  Q
    | ||||||||| ||||| ||| ||||||||||||||||    
T  6142742 atgcttgggtccatgttccaagatcttttgatcttgtt 6142705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 6917732 - 6917520
Alignment:
Q  30 tatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttacagtga-------aacctttgtacccataatcagtatagtgggt 122  Q
    |||||||| |||||||||| ||||||||| | |||||||||||| ||||||||| |||||||       ||||   |||||||||||||||||||| |||    
T  6917732 tatggtagagagcatgagaaagaggaaataattgaatttttactatcagacagtgacagtgatgctgacaacc-gggtacccataatcagtatagttggt 6917634  T
Q  123 gtgattgggatgggtaagacaaccattgcccgacttgtttacaacaaccacaagatacatgagcaatttgaacttaaagcttgggtctatgtttcaaaat 222  Q
     | |||||||| ||||| || ||| |||| | ||||||||||||  | || |||||    |||||  | |||||||||||||||||| ||| |||| |||    
T  6917633 cttattgggataggtaatacgacccttgcgcaacttgtttacaatgatcataagatgatggagcatgtggaacttaaagcttgggtccatgattcagaat 6917534  T
Q  223 cttttgatcttgtt 236  Q
    ||||||||||||||    
T  6917533 cttttgatcttgtt 6917520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 98 - 236
Target Start/End: Complemental strand, 5250701 - 5250563
Alignment:
Q  98 tgtacccataatcagtatagtgggtgtgattgggatgggtaagacaaccattgcccgacttgtttacaacaaccacaagatacatgagcaatttgaactt 197  Q
    |||||| |||||||| ||||||||| |   ||| ||||||||||| ||  |||| |  ||||  |||||| |||||| ||| || ||||| |||||||||    
T  5250701 tgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgcgtacaacgaccacaggatgcaggagcattttgaactt 5250602  T
Q  198 aaagcttgggtctatgtttcaaaatcttttgatcttgtt 236  Q
    ||||||||||||||||||||| || |||||||| |||||    
T  5250601 aaagcttgggtctatgtttcagaaacttttgatgttgtt 5250563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 6245915 - 6245779
Alignment:
Q  30 tatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttacagtgaaacctttgtacccataatcagtatagtgggtgtgattg 129  Q
    |||||||| |||||||||| ||| ||||| | |||||||||||||||||||||| || || | | |   ||| |||||||||||||||||||| ||   |    
T  6245915 tatggtagagagcatgagaaagaagaaataattgaatttttactttcagacagtcacggttacaaccgggtatccataatcagtatagtgggtctggacg 6245816  T
Q  130 ggatgggtaagacaaccattgcccgacttgtttacaa 166  Q
    |||| |||||||||||| |||| |  |||||||||||    
T  6245815 ggataggtaagacaacccttgcgcagcttgtttacaa 6245779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 6169519 - 6169398
Alignment:
Q  30 tatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttacagtgaaacctttgtacccataatcagtatagtgggtgtgattg 129  Q
    |||||||| |||||||||| ||| ||||| | ||| |||||||||||| ||||| || |||| | |   ||||||||||||||||| |||||| |||  |    
T  6169519 tatggtagagagcatgagaaagaagaaataattgattttttactttcatacagtcacggtgacaaccgggtacccataatcagtatcgtgggtctgaacg 6169420  T
Q  130 ggatgggtaagacaaccattgc 151  Q
    |||| |||||||||||| ||||    
T  6169419 ggataggtaagacaacccttgc 6169398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 6479537 - 6479617
Alignment:
Q  156 cttgtttacaacaaccacaagatacatgagcaatttgaacttaaagcttgggtctatgtttcaaaatcttttgatcttgtt 236  Q
    ||||| ||||||||| |||||||| | || || |||||||||||||| ||||||||||||||| |||||| |||| |||||    
T  6479537 cttgtgtacaacaacaacaagatagaggaacattttgaacttaaagcatgggtctatgtttcagaatcttatgatgttgtt 6479617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 8455112 - 8455048
Alignment:
Q  172 acaagatacatgagcaatttgaacttaaagcttgggtctatgtttcaaaatcttttgatcttgtt 236  Q
    |||||||| | ||||| |||||||||||||| ||||||||||||||| ||||||||||| |||||    
T  8455112 acaagataaaggagcattttgaacttaaagcatgggtctatgtttcagaatcttttgatgttgtt 8455048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 6448286 - 6448417
Alignment:
Q  105 ataatcagtatagtgggtgtgattgggatgggtaagacaaccattgcccgacttgtttacaacaaccacaagatacatgagcaatttgaacttaaagctt 204  Q
    |||||||| ||||||||| ||  ||||||||||||||| ||  ||||    ||||| |||||  || ||| |||| | ||||| |||||||||||| |||    
T  6448286 ataatcagcatagtgggtctgggtgggatgggtaagaccacttttgctaagcttgtgtacaatcacaacatgataaaggagcattttgaacttaaatctt 6448385  T
Q  205 gggtctatgtttcaaaatcttttgatcttgtt 236  Q
    |||||||||||||| ||| ||||||| |||||    
T  6448386 gggtctatgtttcagaatattttgatgttgtt 6448417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 8590203 - 8590123
Alignment:
Q  156 cttgtttacaacaaccacaagatacatgagcaatttgaacttaaagcttgggtctatgtttcaaaatcttttgatcttgtt 236  Q
    ||||| |||||| || |||||||| | ||||| ||||| |||||||| ||||||||||||||  ||||||||||| |||||    
T  8590203 cttgtgtacaacgacaacaagatagaagagcattttgagcttaaagcatgggtctatgtttctgaatcttttgatgttgtt 8590123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 6519745 - 6519791
Alignment:
Q  184 agcaatttgaacttaaagcttgggtctatgtttcaaaatcttttgat 230  Q
    |||| |||||||||||||| ||||||||||||||| |||||||||||    
T  6519745 agcattttgaacttaaagcatgggtctatgtttcagaatcttttgat 6519791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 6553993 - 6554063
Alignment:
Q  156 cttgtttacaacaaccacaagatacatgagcaatttgaacttaaagcttgggtctatgtttcaaaatcttt 226  Q
    ||||| |||||| || |||||||| |  |||| |||||||||||||| ||||||||||||||| |||||||    
T  6553993 cttgtgtacaacgacaacaagataaagaagcattttgaacttaaagcatgggtctatgtttcagaatcttt 6554063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 6736464 - 6736394
Alignment:
Q  156 cttgtttacaacaaccacaagatacatgagcaatttgaacttaaagcttgggtctatgtttcaaaatcttt 226  Q
    ||||| |||||| || |||||||| |  |||| |||||||||||||| ||||||||||||||| |||||||    
T  6736464 cttgtgtacaacgacaacaagataaagaagcattttgaacttaaagcatgggtctatgtttcagaatcttt 6736394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 4388519 - 4388572
Alignment:
Q  183 gagcaatttgaacttaaagcttgggtctatgtttcaaaatcttttgatcttgtt 236  Q
    ||||| ||||||||||||||||||||||| |||||| || |||||||| |||||    
T  4388519 gagcattttgaacttaaagcttgggtctacgtttcagaaacttttgatgttgtt 4388572  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 5281131 - 5281084
Alignment:
Q  183 gagcaatttgaacttaaagcttgggtctatgtttcaaaatcttttgat 230  Q
    ||||| ||||||| |||||||||||||||||||||| ||| |||||||    
T  5281131 gagcattttgaacataaagcttgggtctatgtttcagaattttttgat 5281084  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 6947727 - 6947663
Alignment:
Q  172 acaagatacatgagcaatttgaacttaaagcttgggtctatgtttcaaaatcttttgatcttgtt 236  Q
    |||||||| | ||||| ||||| |||||| | |||||||| |||||| ||||||||||| |||||    
T  6947727 acaagatagaggagcattttgaccttaaaacatgggtctacgtttcagaatcttttgatgttgtt 6947663  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 35139890 - 35140017
Alignment:
Q  103 ccataatcagtatagtgggtgtgattgggatgggtaagacaaccattgcccgacttgtttacaacaaccacaagatacatgagcaatttgaacttaaagc 202  Q
    ||||||||||||| |||||| |||| |||| ||||||||||||| |  ||| ||||||||||||  |||| | |||||||||||| |||||| |||||||    
T  35139890 ccataatcagtattgtgggtctgatggggaagggtaagacaaccctaacccaacttgtttacaatgaccataggatacatgagcagtttgaatttaaagc 35139989  T
Q  203 ttgggtctatgtttcaaaatcttttgat 230  Q
    ||||||| |||||||  |||||||||||    
T  35139990 ttgggtccatgtttctgaatcttttgat 35140017  T

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Target: scaffold0425 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 7060 - 7102
Alignment:
Q  184 agcaatttgaacttaaagcttgggtctatgtttcaaaatcttt 226  Q
    |||| |||||||||||||| ||||||||||||||| |||||||    
T  7060 agcattttgaacttaaagcatgggtctatgtttcagaatcttt 7102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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