View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_low_54 (Length: 242)
Name: NF14504_low_54
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 45177512 - 45177726
Alignment:
| Q |
15 |
attatactgtatggttactactgtgtaaatttataatagnnnnnnnnnactatttatggattcaactgtatggnnnnnnncctactacaaaataacaa-- |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45177512 |
attatactgtatggttactactgtgtaaatttataatagttttttttt-ctatttatggattcaactgtatggtttttttcctactacaaaataacaatt |
45177610 |
T |
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| Q |
113 |
-----caccattcatgttatgttaatgaaatggtccagctcgagtgnnnnnnnnnnnnnnnt-ttaagagtttgaaacacaatgataattcatcttcttg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
45177611 |
aacaacaccattcatgttatgttaatgaaatggtccagctcgagtgaaaaatcaaacaaattgttaagagtttgaaacacaatgataattcatcttcttg |
45177710 |
T |
|
| Q |
207 |
tgagtattaagttact |
222 |
Q |
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|||||||||||||||| |
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| T |
45177711 |
tgagtattaagttact |
45177726 |
T |
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