View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_low_58 (Length: 238)
Name: NF14504_low_58
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 16649681 - 16649902
Alignment:
| Q |
1 |
cataaattttcaagtgattatcatatttttctcttactcgtttgattttaaaatcctaaaaaagtgtaaaactatttatattttgtctaaaacataattt |
100 |
Q |
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| T |
16649681 |
cataaattttcaagtgattatcatatttttctcttactcgtttgattttaaaatcctaaaaaagtgtaaaactatttatattttgtctaaaacataattt |
16649780 |
T |
|
| Q |
101 |
tgtcacaccgtaagttgttccatatatcacactgcaaaatttgaaggaatgttgtgaggtgaaatctactagctcttatcatgagttgtctcaccggagt |
200 |
Q |
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| T |
16649781 |
tgtcacaccgtaagttgttccgtatatcacactgcaaaatttgaaggaatgttgtgaggtgaaatctactaactcttatcatgagttgtctcaccggagt |
16649880 |
T |
|
| Q |
201 |
gcaatctaagctcaacgtattt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
16649881 |
gcaatctaagctcaacgtattt |
16649902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 24757386 - 24757578
Alignment:
| Q |
7 |
ttttcaagtgattatcatatttttctcttactcgtttgattttaaaatcctaa-aaaagtgtaaaactatttatattttgtctaaaacataattttgtca |
105 |
Q |
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| T |
24757386 |
ttttcatgtgtttatgctatttttctctaactcatttgattttaaaaccctaacaaaagtgtaaaactacttaaatgttgtctagaacagaaatttgttg |
24757485 |
T |
|
| Q |
106 |
caccgtaagttgttccatatatcacactgcaaaatttgaaggaatgttgtgaggtgaaatctactagctcttatcatgagttgtctcaccgga |
198 |
Q |
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| T |
24757486 |
caccgcaagttgttccttatatcgcactgcaaaatttgatggaatgttgtgtggtgaaatctactagctcatattgtgagttgtcccaccgga |
24757578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 14909418 - 14909585
Alignment:
| Q |
7 |
ttttcaagtgattatcatatttttctcttactcgtttgattttaaaatcctaaaaa-agtgtaaaactatttatattttgtctaaaacataattttgtca |
105 |
Q |
| |
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|||||||||| ||| ||||||||| | ||| ||||||||||||| |||||||| ||||||| |||| ||| || |||||||||| || || || |
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| T |
14909418 |
ttttcaagtgtatatgctatttttctgtaactaatttgattttaaaaccctaaaaatagtgtaatactacttaaatg--gtctaaaacagaaattcatcg |
14909515 |
T |
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| Q |
106 |
caccgtaagttgttccatatatcacactgcaaaatttgaaggaatgttgtgaggtgaaatctactagctc |
175 |
Q |
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| T |
14909516 |
taccgcaagttgttcaatatatcacactacaaaatttgattgaatattgtgagctcaaatctactagctc |
14909585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 24769889 - 24770011
Alignment:
| Q |
7 |
ttttcaagtgattatcatatttttctcttactcgtttgattttaaaatcctaaaa-aagtgtaaaactatttatattttgtctaaaacataattttgtca |
105 |
Q |
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|||||||||| ||| ||||||||||| |||| |||||| |||||| ||||||| |||||||||| || |||||| |||||||||||||| |||| |
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| T |
24769889 |
ttttcaagtgtttaggctatttttctctaactcatttgatgttaaaaccctaaaataagtgtaaaatta-ttatatactgtctaaaacataaatttgatg |
24769987 |
T |
|
| Q |
106 |
caccgtaagttgttccatatatca |
129 |
Q |
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||||| ||| |||||||||||||| |
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| T |
24769988 |
caccgcaagctgttccatatatca |
24770011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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