View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14504_low_59 (Length: 237)
Name: NF14504_low_59
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_59 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 2372739 - 2372520
Alignment:
| Q |
18 |
ttaagcttgtgaagtagaacacaaccttttcctttccaccaatcttaacatcaacgaaaacatcatctttcatttcctcttcatcaattgatgtttgttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2372739 |
ttaagcttgtgaagtagaacacaaccttttcctttccaccaatcttaacatctacaaaaacatcatctttcatttcctcttcatcaattgatgtttgttt |
2372640 |
T |
|
| Q |
118 |
aaggtaaaaaagactatcttgagattgttcttgtaaggattttcgaaacgatgaaatcacttcaggatcaaaatcaacctggttgagctttgattcttcc |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2372639 |
aaggtaaaaaggactatcttgagattgttcttgtaaggattttcgaaacgatgaaatcacttcaggatcaaaatcaacctggttgagctttgattcttcc |
2372540 |
T |
|
| Q |
218 |
tcagtaatttgaagccacat |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
2372539 |
tcagtaatttgaagccacat |
2372520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University