View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_low_6 (Length: 491)
Name: NF14504_low_6
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 273 - 477
Target Start/End: Complemental strand, 26326909 - 26326705
Alignment:
| Q |
273 |
tttataccacttgtgagtatgattaggattacaaataaaatgtccataagataaaattaacatataaaatattgttttgataatttgaataataagagaa |
372 |
Q |
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| T |
26326909 |
tttataccacttgtgagtatgattaggattacaaataaaatgtccataagataaaattaacatataaaatattgttttgataatttgaataataagagaa |
26326810 |
T |
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| Q |
373 |
tattttataccactcatgttttgcttaagtgtttcagagagcaaatcataagaagcaaattcaaaatagtagattgtctggtagagtggtagttactact |
472 |
Q |
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| T |
26326809 |
tattttataccactcatgttttgcttaagtgtttcagagagcaaatcataagaagcaaattcaaaatagtagattgtctggtagagtggtagttactact |
26326710 |
T |
|
| Q |
473 |
atata |
477 |
Q |
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||||| |
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| T |
26326709 |
atata |
26326705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 26335119 - 26334802
Alignment:
| Q |
1 |
tgggaagatagcaaggagtgagaaaaatatacttgaatatatgatggataaatttagggttttata--gtgaaaggaggaagacgtggcaaacagttgga |
98 |
Q |
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| T |
26335119 |
tgggaagttagaaaggagagagtaaaatataattgaatatatgatggataaatttagggttttatatagtgaaaggag----acgtggcaaacagttgga |
26335024 |
T |
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| Q |
99 |
atgtgagaattatgttacaaaaaggattaaatggttgaatttgtgaataattaaggtttgattttgtcatttgggctgcttagtgaaaacacggtgggag |
198 |
Q |
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| T |
26335023 |
atgtgagaattatgttacaaaaaggattgaatggttgaatttgtgaataattaagatttgattttgtaattt-ggctgcgtagttaaaacacggtgggag |
26334925 |
T |
|
| Q |
199 |
gctgaagacttgagtaaaataaacttaagtttgtatggccaattctattttataccacnnnnnnnaaggggata-tttataccacttgtgagtatgatta |
297 |
Q |
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| T |
26334924 |
gctgaagacttgagtaaaataaacttaagtttgtatggccaagtctattttataccactttttttaagaggatattttataccacttgtcagtatgattt |
26334825 |
T |
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| Q |
298 |
ggattacaaataaaatgtccata |
320 |
Q |
| |
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|||||| |||||||||||||||| |
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| T |
26334824 |
ggattaaaaataaaatgtccata |
26334802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 41 - 256
Target Start/End: Complemental strand, 26327115 - 26326900
Alignment:
| Q |
41 |
atgatggataaatttagggttttatagtgaaaggaggaagacgtggcaaacagttggaatgtgagaattatgttacaaaaagga-ttaaatggttgaatt |
139 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
26327115 |
atgatgaattaatttagggttttatagtgaaaggaggaagacgtggcaaacagttggaatgtgagaattatgttacaaaaaggatttgaatggttgaatt |
26327016 |
T |
|
| Q |
140 |
tgtgaataattaaggtttgattttgtcatttgggctgcttagtgaaaacacggtgggaggctgaagacttgagtaaaataaacttaagtttgtatggcca |
239 |
Q |
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| T |
26327015 |
tgtgaataattaagatttgattttgtca-ttgggctgcttagtgaaaacacggtgggaggctgaagacttgagtaaaatacactaaagttggaatggcca |
26326917 |
T |
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| Q |
240 |
attctattttataccac |
256 |
Q |
| |
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| T |
26326916 |
agtctattttataccac |
26326900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 26320437 - 26320340
Alignment:
| Q |
154 |
gtttgattttgtcatttgggctgcttagtgaaaa-cacggtgggaggctgaagacttgagtaaaataaacttaagtttgtatggccaattctattttat |
251 |
Q |
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| T |
26320437 |
gtttgattttgtcatt-gggctgcttagtgaaaaacacggtggcagaatgaagactttagtaaaataaacaaaagttggtatggccaggtctattttat |
26320340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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