View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_low_62 (Length: 227)
Name: NF14504_low_62
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 51069325 - 51069522
Alignment:
| Q |
13 |
agcataggctcaaaactgtgattgtattccaactctgcaaaacccctaattccatatctccctgtataactggcctccttgaagcctaaccactttgcaa |
112 |
Q |
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| T |
51069325 |
agcataggctcaaaactgtgattgttttccaactctgcgaaacccctgattccatatctccctgtataactggcctccttgaagcctaaccactttgcaa |
51069424 |
T |
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| Q |
113 |
ccacagagttgattccatcacatcctatcaataccttttaaattacaaattacagtcatgtatcagttaaagcaaaatcaaggttgatagtcattatg |
210 |
Q |
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| T |
51069425 |
ccacagagttgattccatcacatcctatcaataccttttaaattacaaattacactcatgtatcagttaaagcaaaatcaaggttgatagtcattatg |
51069522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 40616837 - 40616746
Alignment:
| Q |
65 |
catatctccctgtataactggcctccttgaagcctaaccactttgcaaccacagagttgattccatcacatcctatcaataccttttaaatt |
156 |
Q |
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| T |
40616837 |
catatctccctgtgtaagaggcctccttgaagcctagccactttgctaccaaagagttaactccatcacacccgatcaataccttttaaatt |
40616746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 51035425 - 51035492
Alignment:
| Q |
84 |
ggcctccttgaagcctaaccactttgcaaccacagagttgattccatcacatcctatcaatacctttt |
151 |
Q |
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| T |
51035425 |
ggcctccttgaagcctaaccattttgctaccacagagtttactccatcacacccaatcaatacctttt |
51035492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 51031142 - 51031251
Alignment:
| Q |
42 |
caactctgcaaaacccctaattccatatctccctgtataactggcctccttgaagcctaaccactttgcaaccacagagttgattccatcacatcctatc |
141 |
Q |
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| T |
51031142 |
caactctgcataacctctggttgcatatctccctgtgtatgaggcttccttgaaccctaaccattttgccaccacagagtttactccatcacacccaatc |
51031241 |
T |
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| Q |
142 |
aatacctttt |
151 |
Q |
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| T |
51031242 |
aatacctttt |
51031251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 51063894 - 51064003
Alignment:
| Q |
42 |
caactctgcaaaacccctaattccatatctccctgtataactggcctccttgaagcctaaccactttgcaaccacagagttgattccatcacatcctatc |
141 |
Q |
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| T |
51063894 |
caactctgcataacctctggttgcatatctccctgtgtatgaggcttccttgaaccctaaccattttgccaccacagagtttactccatcacacccaatc |
51063993 |
T |
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| Q |
142 |
aatacctttt |
151 |
Q |
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|||||||||| |
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| T |
51063994 |
aatacctttt |
51064003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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