View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14505_high_7 (Length: 240)
Name: NF14505_high_7
Description: NF14505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14505_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 1918262 - 1918469
Alignment:
| Q |
14 |
aagaatattatgtaagataactgtgtggaagaatgaaagtacagtgtggataagaggtgggttgagttgttaataggagggagagaatgagagagtgatg |
113 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1918262 |
aagaatattatgtaagataattgtgtggaagaatgaaagtacagtgtggataagaggtgggttgagttgttaataggagggagagaatgagagagtgatg |
1918361 |
T |
|
| Q |
114 |
aaaagnnnnnnncaagagaagggtggttgagggaggtagtggaggtgagtaatatattgagtactatggagcaactcacttcatcatcttgagtttgtca |
213 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1918362 |
aaaagaaaaaaacaagagaagggtggtt----gaggtagtggaggtgagtaatatattgagtactatggagcaactcacttcatcatcttgagtttgtca |
1918457 |
T |
|
| Q |
214 |
ttgtcatattga |
225 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1918458 |
ttgtcatattga |
1918469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 1872243 - 1872289
Alignment:
| Q |
22 |
tatgtaagataactgtgtggaagaatgaaagtacagtgtggataaga |
68 |
Q |
| |
|
|||||||| ||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
1872243 |
tatgtaaggtaattgtttggaagaatgaaagtacagtgtggataaga |
1872289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 17491308 - 17491504
Alignment:
| Q |
14 |
aagaatattatgtaagataactgtgtggaagaatgaaagtacagtgtggataagaggtgggttgagttgttaataggagggagagaatgagagagtgatg |
113 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17491308 |
aagaatattatgtaagataattgtgtggaagaatgaaagtacagtgtggataagaggtgggttgagttgttaataggagggagagaatgagagagtgatg |
17491407 |
T |
|
| Q |
114 |
aaaagnnnnnnncaagagaagggtggttgagggaggtagtggaggtgagtaatatattgagtactatggagcaactcacttcatcatcttgagtttgtca |
213 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17491408 |
aaaagaaaaaaacaagagaagggtggttgagggaggtagt----------------ttgagtactatggagcaactcacttcatcatcttgagtttgtca |
17491491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 17561906 - 17561710
Alignment:
| Q |
14 |
aagaatattatgtaagataactgtgtggaagaatgaaagtacagtgtggataagaggtgggttgagttgttaataggagggagagaatgagagagtgatg |
113 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17561906 |
aagaatattatgtaagataattgtgtggaagaatgaaagtacagtgtggataagaggtgggttgagttgttaataggagggagagaatgagagagtgatg |
17561807 |
T |
|
| Q |
114 |
aaaagnnnnnnncaagagaagggtggttgagggaggtagtggaggtgagtaatatattgagtactatggagcaactcacttcatcatcttgagtttgtca |
213 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17561806 |
aaaagaaaaaaacaagagaagggtggttgagggaggtagt----------------ttgagtactatggagcaactcacttcatcatcttgagtttgtca |
17561723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University