View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14505_low_11 (Length: 238)
Name: NF14505_low_11
Description: NF14505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14505_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 16975357 - 16975140
Alignment:
| Q |
8 |
agtaggttgtaaaatcagattgggacaataagtgatttaaagtttctcaagagtagttacgtttgtcatgctttgcggcaaggatattaagcttttccaa |
107 |
Q |
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| T |
16975357 |
agtaggttgtaaaatcagattgggacaataagtgatttgaagtttctcaagagtagttacgtttgtcatgctttgcggcaaggatattaagcttttccaa |
16975258 |
T |
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| Q |
108 |
aatgcaaatctcaaaactttaagagaattcaaaccatgcaatgcatggtctggaatagactcaagcttaccaagacatgatatgtatagtttttccaggg |
207 |
Q |
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| T |
16975257 |
aatgcaaatctcaaaacttgaagagaattcaaaccatgcaatgcatggtcaggaatagactcaagcttaccaaaacatgagatgtatagtttttccaggg |
16975158 |
T |
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| Q |
208 |
atctaagagagttgagtt |
225 |
Q |
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| T |
16975157 |
atctaagagagttgagtt |
16975140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 16917351 - 16917233
Alignment:
| Q |
16 |
gtaaaatcagattgggacaataagtgatttaaagtttctcaagagtagttacgtttgtcatgctttgcggcaaggatattaagcttttccaaaatgcaaa |
115 |
Q |
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||||||| || |||||||||||| |||| |||| ||| |||| |||||| | |||| | ||||| ||||||||| ||||||| || |||| |||||| |
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| T |
16917351 |
gtaaaatgagtttgggacaataatgtatttgaagtctctgaagactagttagggctgtcgtactttggggcaaggattttaagctattgcaaagtgcaaa |
16917252 |
T |
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| Q |
116 |
tctcaaaactttaagagaa |
134 |
Q |
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| T |
16917251 |
gcccaaaacttgaagagaa |
16917233 |
T |
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