View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14505_low_2 (Length: 463)
Name: NF14505_low_2
Description: NF14505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14505_low_2 |
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| [»] scaffold0247 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Original strand, 15080109 - 15080551
Alignment:
| Q |
19 |
aaatcaacatataataggcacttattaacaattaacgccccttatatcaatcagtggtcacataatcccaatttcatatctcaaagtcttcgttaatcta |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15080109 |
aaatcaacatataataggcactttttaacaattaacgccccttatatcaatcagtggtcacataatcccaatttcatatctcaaagtcttcgttaatcta |
15080208 |
T |
|
| Q |
119 |
actagtgaatatggctaaacggcaatcaaagacaacatccatcgttcacatagcaaccttgaacaaacagtgacacgcaacaatccagaacaca----ct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15080209 |
actagtgaatatggctaaacggcaatcaaagacaacatccatcgttcacatagcaaccttgaacaaacagtgacacgcaacaatccagaacacactagct |
15080308 |
T |
|
| Q |
215 |
aggagagaattgaatatcacgatataataaacaacgatacaaacaaaaaccaagaacacaaataatcacatacccaaatttgcacataaattaacggcat |
314 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15080309 |
aggagagaattgaatatcacgacataataaacaacaatacaaacaaaaaccaagaacacaaataatcacatacccaaatttgcacataaattaacggcat |
15080408 |
T |
|
| Q |
315 |
aaaattcaccaaacaaaatcatcaattcatcaattcaacatttaaacgtaagccagatcaaaaagaaaagcgattacgagaataagtatccaa-cccctt |
413 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||| |||||| |
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| T |
15080409 |
aaaattcaccaaacaaaatcagcaattcatcaattcaacatttaaacgtaagctagatcaaaaagaaaagtgatt-cgagaataagtatccaaccccctt |
15080507 |
T |
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| Q |
414 |
accttaagaaaatcgatcggtag----ctcttggttcttctctc |
453 |
Q |
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| T |
15080508 |
accttaagaaaatcgatctgcagttctctcttggttcttctctc |
15080551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Original strand, 13515592 - 13516034
Alignment:
| Q |
19 |
aaatcaacatataataggcacttattaacaattaacgccccttatatcaatcagtggtcacataatcccaatttcatatctcaaagtcttcgttaatcta |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13515592 |
aaatcaacatataataggcactttttaacaattaacgccccttatatcaatcagtggtcacataatcccaatttcatatctcaaagtcttcgttaatcta |
13515691 |
T |
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| Q |
119 |
actagtgaatatggctaaacggcaatcaaagacaacatccatcgttcacatagcaaccttgaacaaacagtgacacgcaacaatccagaacacactag-- |
216 |
Q |
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| T |
13515692 |
actagtgaatatggctaaacggcaatcaaagacaacatccatcgttcacatagcaaccttgaacaaacagtgacacgcaacaatccagaacacactagct |
13515791 |
T |
|
| Q |
217 |
--gagagaattgaatatcacgatataataaacaacgatacaaacaaaaaccaagaacacaaataatcacatacccaaatttgcacataaattaacggcat |
314 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13515792 |
aggagagaattgaatatcacgacataataaacaacaatacaaacaaaaaccaagaacacaaataatcacatacccaaatttgcacataaattaagggcat |
13515891 |
T |
|
| Q |
315 |
aaaattcaccaaacaaaatcatcaattcatcaattcaacatttaaacgtaagccagatcaaaaagaaaagcgattacgagaataagtatccaacccc-tt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||| |||||||||||||||||||||||||| || |
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| T |
13515892 |
aaaattcaccaaacaaaatcatcaattcatcaattcaacatttaaatgtaagctagatcaaaa-gaaaagtgattacgagaataagtatccaaccccctt |
13515990 |
T |
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| Q |
414 |
accttaagaaaatcgatcggtagctct----tggttcttctctc |
453 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||| |
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| T |
13515991 |
accttaagaaaatcgatcggcagctctctcttggttcttctctc |
13516034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 74 - 440
Target Start/End: Complemental strand, 15684976 - 15684615
Alignment:
| Q |
74 |
ggtcacataatcccaatttcatatctcaaagtcttcgttaatctaactagtgaatatggctaaacggcaatcaaagacaacatccatcgttcacatagca |
173 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15684976 |
ggtcacataatcccaatttcatatatcaaagtcttcgttaatctaactagtgaatatggctaaacggcaatcaaagacaacatccatcgttcacatagca |
15684877 |
T |
|
| Q |
174 |
accttgaacaaacagtgacacgcaacaatccagaacacactaggagagaattgaatatcacgatataataaacaacgatacaaacaaaaacc-aagaaca |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||| |
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| T |
15684876 |
accttgaacaaacagtgacacgcaacaatccagaacacactaggagagaattgaatatcacgacataataaacaacaatacaaacaaaaaccaaagaaca |
15684777 |
T |
|
| Q |
273 |
caaataatcacatacccaaatttgcacataaattaacggcataaaattcaccaaacaaaatcatcaattcatcaattcaacatttaaacgtaagccagat |
372 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||| |||| |
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| T |
15684776 |
caaataatcacatacccaaatttgcacataaattaagggcataaaattcaccaaacaaaatcatcaattcaaca-------atttaaacgtaagctagat |
15684684 |
T |
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| Q |
373 |
caaaaagaaaagcgattacgagaataagtatccaa-ccccttaccttaagaaaatcgatcggtagctct |
440 |
Q |
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||||||||||| | ||| |||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
15684683 |
caaaaagaaaattgtttatgagaataagtatccaacccccttaccttaagaaaatcgatcggcagctct |
15684615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 15687434 - 15687375
Alignment:
| Q |
19 |
aaatcaacatataataggcacttattaacaattaacgccccttatatcaatcagtggtca |
78 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15687434 |
aaatcaacatataataggcactttttaacaattaacgccccttatatcaatcagtggtca |
15687375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 32655676 - 32655755
Alignment:
| Q |
163 |
ttcacatagcaaccttgaacaaacagtgacacgcaacaatccagaacacactaggagagaattgaatatcacgatataat |
242 |
Q |
| |
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|||||||||||||||||||||||||||| | |||||||||||||||||| || ||||||||| |||| |||||||||| |
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| T |
32655676 |
ttcacatagcaaccttgaacaaacagtgttgcacaacaatccagaacacaccagtagagaattgtatataacgatataat |
32655755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0247 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0247
Description:
Target: scaffold0247; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 354
Target Start/End: Complemental strand, 1395 - 1360
Alignment:
| Q |
319 |
ttcaccaaacaaaatcatcaattcatcaattcaaca |
354 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
1395 |
ttcacaaaacaaaatcatcaattcatcaattcaaca |
1360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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