View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14505_low_3 (Length: 409)
Name: NF14505_low_3
Description: NF14505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14505_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 46201938 - 46201564
Alignment:
| Q |
18 |
tttttcccaaattaatacaatggaaacattaaatacaaagattaaaaccaatctgcaaaatcaaacgaaaaattggggaaagaagtaaagggagtttctg |
117 |
Q |
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| T |
46201938 |
tttttcccaaattaatacaatggaaacattaaaaaaaaagattaaaaccaatctgcaaaatcaaacgaaaaattggggaaagaactaaagggagtttctg |
46201839 |
T |
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| Q |
118 |
gatctgaacttgaattggggaatgaagctgaatctgcttaaattattttctggaaattttgttgaatggaggccagatgtatgtctttctttgtacccat |
217 |
Q |
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| T |
46201838 |
gatctgaagttgaattggggaatgaagctgaatctgcttaaattattttatggaaattttgttgaatgaagtccatatgtatgtctttctttgtacccat |
46201739 |
T |
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| Q |
218 |
tcgtttagaatagaaggccatgaaccacttttcaggcgcggcggtgaattgtcggcgaccggcgaccacatgctggccggaaaacatgagaaaaggaggt |
317 |
Q |
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| T |
46201738 |
tcgtttagaatagaaggccatgaaccacttttcaggcgcggcggtgaattgtcggcgaccggcgaccacatggtggccagaaaacatgagaaaagaaggt |
46201639 |
T |
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| Q |
318 |
ggttaggaattttaaacatctctaatctgagaaataaaatagtgggttttgtagaggaaagataaaggaattcaa |
392 |
Q |
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| T |
46201638 |
ggtttggaattttcaacatctccaatctgatcaataaaatagtgggttttgtataggaaagataaaggaattcaa |
46201564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 392
Target Start/End: Original strand, 28590212 - 28590599
Alignment:
| Q |
7 |
acatcatcaaatttttcccaaattaatacaatggaaacattaaatacaaa---gattaaaaccaatctgcaaaatcaaacgaaaaattggggaaagaagt |
103 |
Q |
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| T |
28590212 |
acatcatcaa-tttttcccaaattaatgcaatggaaacataaaaaaaaaaaaggattaaaaccaatctgcaaaatcaaacgaaaaattggggaaagaagt |
28590310 |
T |
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| Q |
104 |
aaagggagtttctggatctgaacttgaattggggaatgaagctgaatctgcttaaattattttctggaaattttgttgaatggaggccagatgtatgtct |
203 |
Q |
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| T |
28590311 |
aaagggagtttctggatctaaagctgaattggggaatgaagctgaacctgtatatgttattttctgaaaattttgttgaatgaatgccatatgtatgtct |
28590410 |
T |
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| Q |
204 |
ttctttgtacccattcgtttagaatagaaggccatgaaccacttttcaggcgcggcggtgaattgtcggcgaccggcgaccacatgctggccggaaaaca |
303 |
Q |
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| T |
28590411 |
ttctttgtacccattcatttagaatagaaggccatgaaccacttttcaggcgcggtagtgaattgtcggcgaccggctaccacatggtggccggaaaaca |
28590510 |
T |
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| Q |
304 |
tgagaaaaggaggtggttaggaattttaaacatctctaatctgagaaataaaatagtgggttttgtagaggaaagataaaggaattcaa |
392 |
Q |
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| T |
28590511 |
tgagaaaaggaggtggtttggaattttcaacatctccaatctaagcaataaaatagtgggttttgtagaggaaagttaaaggaattcaa |
28590599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 621070 - 621022
Alignment:
| Q |
185 |
ggaggccagatgtatgtctttctttgtacccattcgtttagaatagaag |
233 |
Q |
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| T |
621070 |
ggaggacatatgtatgtctttctttgtacccattcatttagaatagaag |
621022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 42685201 - 42685272
Alignment:
| Q |
27 |
aattaatacaatggaaacattaaatacaaagattaaaaccaatctgcaaaatcaaacgaaaaattggggaaa |
98 |
Q |
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| T |
42685201 |
aattaatacaatagaaacataaaaaaaaaggattaaaaccaatccgcaaaatcaaacaaaaaattggagaaa |
42685272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 1577086 - 1577134
Alignment:
| Q |
185 |
ggaggccagatgtatgtctttctttgtacccattcgtttagaatagaag |
233 |
Q |
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| T |
1577086 |
ggaggacatatgtatgtctttctttgtacccattcatttagaatagaag |
1577134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 9082712 - 9082760
Alignment:
| Q |
185 |
ggaggccagatgtatgtctttctttgtacccattcgtttagaatagaag |
233 |
Q |
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| T |
9082712 |
ggaggacatatgtatgtctttctttgtacccgttcatttaaaatagaag |
9082760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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