View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14505_low_5 (Length: 331)
Name: NF14505_low_5
Description: NF14505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14505_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 30223461 - 30223775
Alignment:
| Q |
1 |
caagctcaatacctttgaagtctattatcctaacaaaaagtggatgtcctaaacttgtggaatccaaaattttgtttctaaaagattgtcggtatgactc |
100 |
Q |
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| T |
30223461 |
caagctcaatacctttgaagtctattatcctaacaaaaagtggatgtcctaaacttgtggaatccaaaattttgtttctaaaagattgtcggtatgactc |
30223560 |
T |
|
| Q |
101 |
cgtattatgaagcaatttagatcgcttatagccaacattgtccctcagacaaaatctcagttgttggattaatctaactgccagagcagccgaattatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30223561 |
cgtattatgaagcaatttagatcgcttatagccaacattgtccctcagacaaaatctcagttgttggattaatctaactgccagagcagccgaattatag |
30223660 |
T |
|
| Q |
201 |
aacggaatactatagagaaaagttggagactttacaccatctggtgttaaattaacagtcacatgatagtacaaatcagggatttagttgtggtgaccca |
300 |
Q |
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| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30223661 |
agcggagtactatagagaaaagttggagactttacaccatctggtgttaaattaacagtcacatgatagtacaaatcagggatttagttgtggtgaccca |
30223760 |
T |
|
| Q |
301 |
tttttgtcaaggatc |
315 |
Q |
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||||||||||||||| |
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| T |
30223761 |
tttttgtcaaggatc |
30223775 |
T |
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