View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14505_low_6 (Length: 299)
Name: NF14505_low_6
Description: NF14505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14505_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 4724706 - 4724995
Alignment:
| Q |
1 |
tagagctgtgatcaaagcatctctattctcagccctagcttcttctctaatcctcctttgttcttccctttctctccatctttgttccatcaatatcctc |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4724706 |
tagagctgtgatcaaagcatctctcttctcagccctagcttcttctctaatcctcctttgttcttccctttctctccatctttgttccatcaatatcctc |
4724805 |
T |
|
| Q |
101 |
tcattctcaagcatttccatttgttgtctccactccatctccctcaacctcctttcattctctctagcttcaaatgcttccatccattgtgcttcaattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4724806 |
tcattctcaagcatttccatttgttgtctccactccatctccctcaacctcctttcattctctctagcttcaaatgcttccatccattgtgcttcaattt |
4724905 |
T |
|
| Q |
201 |
gcaattgttgtctcatgaactcatccaaaatttccttcaaattgcggaagaaacttttgctactaccgctttcgttttctacctatgctt |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4724906 |
gcaattgttgtctcatgaactcatccaaaatttccttcaaattgcggaagaaacttttgctactaccgctttcgttttctacctttgctt |
4724995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 25259613 - 25259387
Alignment:
| Q |
18 |
catctctattctcagccctagcttcttctctaatcctcctttgttcttccctttctctccatctttgttccatcaatatcctctcattctcaagcatttc |
117 |
Q |
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||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| |
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| T |
25259613 |
catctcttttttcagccctagcttcttctctaatccttctttgttcttccctttctctccatctttgttccatcattatcctctcattctccaatgcttc |
25259514 |
T |
|
| Q |
118 |
catttgttgtctccactccatctccctcaacctcctttcattctctctagcttcaaatgcttccatccattgtgcttcaatttgcaattgttgtctcatg |
217 |
Q |
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|||| ||||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||| |||||| ||||| |
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| T |
25259513 |
cattctttgtctccactccatctccttcaatctcctctcattctctcttgcttcaaatgcttccatccattgagcttccatttgcatttgttgcctcata |
25259414 |
T |
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| Q |
218 |
aactcatccaaaatttccttcaaattg |
244 |
Q |
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||||| || | ||| |||||||||||| |
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| T |
25259413 |
aactcctcaagaatctccttcaaattg |
25259387 |
T |
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