View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_high_1 (Length: 742)
Name: NF14506_high_1
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_high_1 |
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| [»] chr6 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 656; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 14 - 738
Target Start/End: Original strand, 46505212 - 46505936
Alignment:
| Q |
14 |
atcaatatcgtcttaacaaaaaataaagagccattagtgaacttaaatggctatggatagatttatcagataacataaaaattatgacnnnnnnn--att |
111 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
46505212 |
atcaataacgtcttaacaaaaaataaagagccattagtgaacttaaatggct--ggatagatttatcagataacataaaaattatgactttttttttatt |
46505309 |
T |
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| Q |
112 |
caatggaaagttgaatcaattgattctggaaattctggtagttaaaaaattgtcatagatttcataaaaggttcgaataagttgagttaactatattaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46505310 |
caatggaaagttgaatcaattgattctggaaattctggtagttaaaaaattgtcatagatttcataaaaggttcgaataagttgagttaactgtattaaa |
46505409 |
T |
|
| Q |
212 |
tctgcaagtacgcatagcagataacaaatgggtcaaatcagaatgacaagaagcaatttatgaaatgagataaaaataaaagagtatggatcaatatgca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46505410 |
tctgcaagtacgcatagcagataacaaatgggtcaaatcagaatgacaagaagcaatttatgaaatgagataaaaataaaagagtatggatcaatatgca |
46505509 |
T |
|
| Q |
312 |
ttaatattcttcagctttaatagcacaatctttgatgatgaattctaaaagccattatgtacccaaaaaatatattgaaatgtaccaaaaaagaattcta |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46505510 |
ttaatattcttcagctttaatagcacaatctttgatgatgaattctaaaagccattatgtacccaaaaaatatattgaaatgtaccaaaaaagaattcta |
46505609 |
T |
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| Q |
412 |
agagccctttacactaagaataattctgtgtggtacaatcttgtgacattcatttgctcaatcttgcacgtgaagaagacaatagaaatattagatgcaa |
511 |
Q |
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| T |
46505610 |
agagccctttacactaaaaataattctgtgtggtacaatcttgtgacattcatttgctcaatcttgcacgtgaagaagacaatagaaatattagatgcaa |
46505709 |
T |
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| Q |
512 |
atgcacatgttagagtaaacttggttttcatgcagtaggttattattagtacattaaatgtatagtgccttgttatgctcactgcaagctcaggaaacaa |
611 |
Q |
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| T |
46505710 |
atgcacatgttagagtaaacttgattttcatgcagtaggttattattagtacattaaatgtatagtgccttgttatgctcactgcaagctcaggaaacaa |
46505809 |
T |
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| Q |
612 |
tgttataagttataacacataaaccaaacaaaacaattccttcagaatgaattaaaggaaagttgatcaaatagagtgttatgattcaatatagcatttg |
711 |
Q |
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| T |
46505810 |
tgttataagttataacacataaaccaaacaaaacagttccttcagaatgaattgaaggaaagttgatcaaatatagtgttatgattcaatatagcatttg |
46505909 |
T |
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| Q |
712 |
aggaaacacacttggcataatattatt |
738 |
Q |
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| T |
46505910 |
aggaaacacacttggcataatattatt |
46505936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 560 - 619
Target Start/End: Complemental strand, 22601182 - 22601123
Alignment:
| Q |
560 |
gtacattaaatgtatagtgccttgttatgctcactgcaagctcaggaaacaatgttataa |
619 |
Q |
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| T |
22601182 |
gtacattaaatgtatagtgccttgttctgcacactacaagctcgggaaacaatattataa |
22601123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 689 - 742
Target Start/End: Complemental strand, 32471378 - 32471325
Alignment:
| Q |
689 |
gttatgattcaatatagcatttgaggaaacacacttggcataatattattggtt |
742 |
Q |
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| T |
32471378 |
gttatgattcaaaatagaatatgaggaaatacgcttggcataatattattggtt |
32471325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 742
Target Start/End: Original strand, 6919323 - 6919377
Alignment:
| Q |
688 |
tgttatgattcaatatagcatttgaggaaacacacttggcataatattattggtt |
742 |
Q |
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||||||||||||||||||||| || | ||| ||||||||||||| || ||||||| |
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| T |
6919323 |
tgttatgattcaatatagcatatgggaaaatacacttggcataacataattggtt |
6919377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 742
Target Start/End: Original strand, 28983386 - 28983440
Alignment:
| Q |
688 |
tgttatgattcaatatagcatttgaggaaacacacttggcataatattattggtt |
742 |
Q |
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| T |
28983386 |
tgttatgattcaatatgacatatgatgaagtacacttggcataatattattggtt |
28983440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 742
Target Start/End: Original strand, 5699923 - 5699976
Alignment:
| Q |
689 |
gttatgattcaatatagcatttgaggaaacacacttggcataatattattggtt |
742 |
Q |
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|||||||||||| ||||||| | |||||| ||||||||||||| || ||||||| |
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| T |
5699923 |
gttatgattcaaaatagcatattaggaaatacacttggcataacataattggtt |
5699976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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