View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_high_13 (Length: 442)
Name: NF14506_high_13
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Original strand, 18982057 - 18982475
Alignment:
| Q |
18 |
cttatctataccactttagtagcttgttttggagtttgtattgtgctccc-tcttctttagctttggtaccggaattggaccgctgcctcttcccttggt |
116 |
Q |
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| T |
18982057 |
cttatctataccacttaagtagcttgttttggagtttgtattgtgctcccctcttctttagctttggtaccggaattggaccactgcctcttcccttggt |
18982156 |
T |
|
| Q |
117 |
agctacttttctcgccaatgtccgggttacaaaatcctgacatggctaaatgatattttttgtatgttcgaattatataatccagagagacacgtagcta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
18982157 |
agctacttttctcgccaatgtccgggttacaaaatcctgacatggctaaatgatattttttgtatgttcgaattatataatccagagagtcacgtagcta |
18982256 |
T |
|
| Q |
217 |
cttagttgaaccaagcatatactttcatcaagagcctcaattctcttgattccacaagcatataatttcttcaagaatcatttggtagatgatccaatga |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
18982257 |
cttagttgaaccaagcatatactttcatcaagagcctcaattctcttgattccacaagcatatgatttcttcaagaatcatttggtagatgatccaatga |
18982356 |
T |
|
| Q |
317 |
tcttaatggaaccacatgtactccacggttgaagaaaaaccttaattttgttcaatcacaaatgcaatatttcactttatgataatattcttgaagaaat |
416 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
18982357 |
tcttaatggaa--tcatgtactccacggttgaagaaaaaccttaattttgttcaatcacaaatgcaatatttcactttatgataatatacttgaagaaat |
18982454 |
T |
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| Q |
417 |
acttaaattctgagaataata |
437 |
Q |
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||||||||||||||||||||| |
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| T |
18982455 |
acttaaattctgagaataata |
18982475 |
T |
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