View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14506_high_16 (Length: 425)
Name: NF14506_high_16
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 401
Target Start/End: Original strand, 56402143 - 56402528
Alignment:
| Q |
16 |
cacagaagtgagacttagatccaaaggtattgattgtggaacaacttggccttttggtgtgattcacatttggcaaagggagctcaactcagaaaaagtg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56402143 |
cacagaagtgagacttagatccaaaggtattgattgtggaacaacttggccttttggtgtgattcacatttggcaaagggagctcaactcagaaaaagtg |
56402242 |
T |
|
| Q |
116 |
gtcattgaatcagatgcaattatgcaaaagttgttgttccgcattcatggatccactactgatttttaagaatatggaatctgttctagcaaacacggca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56402243 |
gtcattgaatcagatgcaattatgcaaaagttgttgttctgcattcatggatccactactgatttttaagaatatggaatctgttctagcaaacacggca |
56402342 |
T |
|
| Q |
216 |
accactatgggtttccattaagttattattctcctctacatcatgttttaattgtgaagatctagatagattcagtttctttagcaggtccatgcgtatg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56402343 |
accactatgggtttccattaagttattattctcctctacatcatgttttaattgtgaagatctagatagattcagtttctttagcaggtccatgcgtatg |
56402442 |
T |
|
| Q |
316 |
ctttatgtattttagatagcgtgatttgttaatgatactaagggctagatgattttagcacaaaattgaaaacttttacagtgccc |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
56402443 |
ctttatgtattttagatagcgtgatttgttaatgataccaagggctagatgattttagcacgaaattgaaaacttttacagtgccc |
56402528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University