View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14506_high_19 (Length: 373)

Name: NF14506_high_19
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14506_high_19
NF14506_high_19
[»] chr7 (5 HSPs)
chr7 (20-365)||(8354052-8354397)
chr7 (257-305)||(8360468-8360516)
chr7 (85-143)||(33362378-33362436)
chr7 (88-140)||(42012687-42012739)
chr7 (85-145)||(32962355-32962415)
[»] chr5 (2 HSPs)
chr5 (67-145)||(41264562-41264640)
chr5 (85-145)||(14138596-14138656)
[»] chr1 (2 HSPs)
chr1 (67-145)||(68130-68208)
chr1 (79-143)||(52432706-52432770)
[»] chr8 (2 HSPs)
chr8 (85-145)||(33897620-33897680)
chr8 (67-140)||(35574609-35574682)
[»] chr3 (1 HSPs)
chr3 (92-187)||(54437864-54437959)
[»] chr6 (2 HSPs)
chr6 (86-194)||(7555202-7555311)
chr6 (85-162)||(32342651-32342728)
[»] chr2 (1 HSPs)
chr2 (50-142)||(38576904-38576996)


Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 365
Target Start/End: Complemental strand, 8354397 - 8354052
Alignment:
Q  20 tgatattcatatctttcgttatcataatcattaccattttaaactagagaacatctattttcttgatctctttcatttaacatgtgatttccatattttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8354397 tgatattcatatctttcgttatcataatcattaccattttaaactagagaacatctattttcttgatctctttcatttaacatgtgatttccatattttt 8354298  T
Q  120 tgttctaaaatcgaatcatatttatctgtaaggataaattacctcttatttaagaaggggtaacgtagtcctcaccaattgataaatataagttgaaact 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8354297 tgttctaaaatcgaatcatatttatctgtaaggataaattacctcttattcaagaaggggtaacgtagtcctcaccaattgataaatataagttgaaact 8354198  T
Q  220 tgataaaacattatttgaataccaagtactatggtagatttgaaatttgtggaaatacttgcgttttaaatttaccatagatttttggtaacgcctttga 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8354197 tgataaaacattatttgaataccaagtactatggtagatttgaaatttgtggaaatacttgcgttttaaatttaccatagatttttggtaacgcctttga 8354098  T
Q  320 taaaaagaaaaattactttctaaaacgactgaatgttcatctcact 365  Q
    ||||||||||||||||||||| ||||||||||||||| || |||||    
T  8354097 taaaaagaaaaattactttctgaaacgactgaatgttgatatcact 8354052  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 8360516 - 8360468
Alignment:
Q  257 atttgaaatttgtggaaatacttgcgttttaaatttaccatagattttt 305  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  8360516 atttgaaatttgtggaaatacctatgttttaaatttaccatagattttt 8360468  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 33362436 - 33362378
Alignment:
Q  85 atctctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatattta 143  Q
    ||||| |||||| |||||||||||| ||  | |||||||||||||||||||||||||||    
T  33362436 atctccttcattcaacatgtgatttacaactcttttgttctaaaatcgaatcatattta 33362378  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 42012687 - 42012739
Alignment:
Q  88 tctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatat 140  Q
    |||||||||||| ||||||||| ||| ||||| |||| |||||||||||||||    
T  42012687 tctttcatttaagatgtgatttacatctttttcgttccaaaatcgaatcatat 42012739  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 32962415 - 32962355
Alignment:
Q  85 atctctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatatttatc 145  Q
    ||||| || ||| ||||| |||| | |||||||||||||  ||||||||||||||||||||    
T  32962415 atctcctttattcaacatatgatctacatattttttgtttcaaaatcgaatcatatttatc 32962355  T

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Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 41264562 - 41264640
Alignment:
Q  67 agaacatctattttcttgatctctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatatttatc 145  Q
    |||||||| | |||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  41264562 agaacatcaaatttcttcatctctttcatttaacttgagatttccatattttttgttctaaaatcgaatcatatttatc 41264640  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 14138596 - 14138656
Alignment:
Q  85 atctctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatatttatc 145  Q
    |||||||||||| ||||||| || | ||| |||||||||  |||||||||| |||||||||    
T  14138596 atctctttcattcaacatgtaatcttcatcttttttgtttgaaaatcgaattatatttatc 14138656  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 68130 - 68208
Alignment:
Q  67 agaacatctattttcttgatctctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatatttatc 145  Q
    ||||||||||  ||||| ||||| ||||||||||||||||| ||||| ||||| |||| |||||||||| |||||||||    
T  68130 agaacatctaacttcttcatctccttcatttaacatgtgatctccatctttttcgttccaaaatcgaatgatatttatc 68208  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 52432706 - 52432770
Alignment:
Q  79 ttcttgatctctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatattta 143  Q
    ||||| ||||| ||||||||||| ||||| ||||| |  ||||||||| |||||||| |||||||    
T  52432706 ttcttcatctccttcatttaacaagtgatctccatctaatttgttctataatcgaattatattta 52432770  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 33897620 - 33897680
Alignment:
Q  85 atctctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatatttatc 145  Q
    ||||| ||||||||||||||||||| ||| ||||| ||||||||||| |||| | ||||||    
T  33897620 atctccttcatttaacatgtgatttacatctttttcgttctaaaatctaatcgtgtttatc 33897680  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 35574682 - 35574609
Alignment:
Q  67 agaacatctattttcttgatctctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatat 140  Q
    |||||||| | ||| || ||||| |||||| ||||||| || ||||| ||||| |||| |||||||||||||||    
T  35574682 agaacatcaaattttttcatctcattcattcaacatgtcatctccatctttttcgttccaaaatcgaatcatat 35574609  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 54437864 - 54437959
Alignment:
Q  92 tcatttaacatgtgatttccatattttttgttctaaaatcgaatcatatttatctgtaaggataaattacctcttatttaagaaggggtaacgtag 187  Q
    |||||||||| ||| ||||||| |||||  || ||||||| |||||||||||||  ||  | ||||||||| || ||| || ||||||||||||||    
T  54437864 tcatttaacacgtggtttccatctttttcattttaaaatcaaatcatatttatcattagaggtaaattacccctaattcaacaaggggtaacgtag 54437959  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 194
Target Start/End: Complemental strand, 7555311 - 7555202
Alignment:
Q  86 tctctttcatttaacatgtgatttccatatt-ttttgttctaaaatcgaatcatatttatctgtaaggataaattacctcttatttaagaaggggtaacg 184  Q
    |||||||||||||| |||| | || ||| || |||| || | |||| ||||||||||| ||  ||  ||||||||||| |||||| |||||||||||||     
T  7555311 tctctttcatttaatatgtaaattgcattttattttatttttaaattgaatcatatttgtcattacagataaattaccccttattcaagaaggggtaaca 7555212  T
Q  185 tagtcctcac 194  Q
    |||| |||||    
T  7555211 tagttctcac 7555202  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 32342651 - 32342728
Alignment:
Q  85 atctctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatatttatctgtaaggataaattacc 162  Q
    ||||| |||||| |||||| ||| || || ||||| |||| | |||| |||||||||||||  |||||||||||||||    
T  32342651 atctcattcattcaacatgcgatctctatttttttcgttccagaatcaaatcatatttatcattaaggataaattacc 32342728  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 38576996 - 38576904
Alignment:
Q  50 ttaccattttaaactagagaacatctattttcttgatctctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatattt 142  Q
    |||||||||| | ||| |||||||  |  ||||| |||||||||||| |||||||||||||||| | ||| || | | |||| ||||||||||    
T  38576996 ttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgatttccatctctttcgtaccataatcaaatcatattt 38576904  T

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