View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14506_high_2 (Length: 723)
Name: NF14506_high_2
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 14 - 423
Target Start/End: Complemental strand, 9399915 - 9399501
Alignment:
| Q |
14 |
caaaggaaggaaggaaaataagggtgagcagggtgctgaattcagagactttcttgatatattgcttgattgtgctgaggatcaaaattcagaaataaaa |
113 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9399915 |
caaaggaaggaaagaaaataagggtgagcaaggtgctgaattcagagactttcttgatatattgcttgattgtgccgaggatcaaaattcagaaataaaa |
9399816 |
T |
|
| Q |
114 |
gttcaaagggttcacatcaaggccttgattatggtaattaaatttatcgctacttctttcttttatgtacaattcgta-atcaatgctcaaacgtttgtt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
9399815 |
gttcaaagggttcacatcaaggccttgattatggtaattaaatttatctctacttctttcttttatgtacaagtcgtatatcaatgctcaaatgtttgtt |
9399716 |
T |
|
| Q |
213 |
ttggattttttcttactaaaaaatctagaagnnnnnnnnnnaagaacaatatattgaag-----tatattgaacacacaattttatatgatccacagtaa |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9399715 |
ttggattttttcttactaaaaaatctagaag-tatttttttaagaacaatatattgaagtatattatattgaacacacaattttatatgatccacagtaa |
9399617 |
T |
|
| Q |
308 |
aacttaattggtacggatttgaataacaaatattccctttgaaaaatattcattgatgagttaatatttcttctatgagcacgtgcctcttagacctaat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
9399616 |
aacttaattggtacggatttgaataacaaatattccctttgaaaaatattcattgatgagttgatatttcttttatgagcacgtgcctgttagacctaat |
9399517 |
T |
|
| Q |
408 |
caactagattttgaca |
423 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
9399516 |
caactagattttgaca |
9399501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 14 - 177
Target Start/End: Complemental strand, 9382446 - 9382283
Alignment:
| Q |
14 |
caaaggaaggaaggaaaataagggtgagcagggtgctgaattcagagactttcttgatatattgcttgattgtgctgaggatcaaaattcagaaataaaa |
113 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9382446 |
caaaggaaggaaagaaaataagggtgagcaaggtgctgaattcagagactttcttgatatattgcttgattgtgctgaggatcaaaattcagaaataaaa |
9382347 |
T |
|
| Q |
114 |
gttcaaagggttcacatcaaggccttgattatggtaattaaatttatcgctacttctttctttt |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
9382346 |
gttcaaagggttcacatcaaggccttgattatggtaattaaatttatccctacttccttctttt |
9382283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 307 - 423
Target Start/End: Complemental strand, 9382129 - 9382012
Alignment:
| Q |
307 |
aaacttaattggtacggatttgaataacaaatattccctttgaaaaatattcattgatgagttaatatttcttctatgagcacgtgcc-tcttagaccta |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||| ||||||| |||||||||||||||| | |||||| || |
|
|
| T |
9382129 |
aaacttaattggtacggatttgaataacaaatattcccttcgatacatattcattgatgagttgatatttcatctatgagcacgtgccttattagactta |
9382030 |
T |
|
| Q |
406 |
atcaactagattttgaca |
423 |
Q |
| |
|
|||| || ||||||||| |
|
|
| T |
9382029 |
gtcaattaaattttgaca |
9382012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 578 - 671
Target Start/End: Complemental strand, 9381890 - 9381800
Alignment:
| Q |
578 |
aacttaaaaaagatgatgtattgtaataggttgattgtgtagaatattttacggtaacgatcaaaattattctcttattatatcatcttcttat |
671 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
9381890 |
aacttaaaaaagatgatgtattgtgataggttgattgtgtagaatattttacagtaacaatcaaaattattctc---ttatatcatcttcttat |
9381800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 490 - 548
Target Start/End: Complemental strand, 9399434 - 9399376
Alignment:
| Q |
490 |
atgcaccaacagcctaacataactgttcgatccatggttgactttcgtcatatgaaact |
548 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9399434 |
atgcaccaacagccaaacataactgttcgatccatggttgactttagtcatatgaaact |
9399376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 492 - 558
Target Start/End: Complemental strand, 9381943 - 9381877
Alignment:
| Q |
492 |
gcaccaacagcctaacataactgttcgatccatggttgactttcgtcatatgaaacttaaaaaagat |
558 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
9381943 |
gcaccaacagccaaacataattgttcgatccatggttgactttagtcatatttaacttaaaaaagat |
9381877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 673 - 706
Target Start/End: Complemental strand, 9399366 - 9399333
Alignment:
| Q |
673 |
tcacacatgatgcttatgggtatgtgctaatgtt |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
9399366 |
tcacacatgatgcttatgggtatgtgctaatgtt |
9399333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 150
Target Start/End: Original strand, 23243822 - 23243915
Alignment:
| Q |
57 |
agagactttcttgatatattgcttgattgtgctgaggatcaaaattcagaaataaaagttcaaagggttcacatcaaggccttgattatggtaa |
150 |
Q |
| |
|
||||||||||||||||| | ||||||| || |||||| ||| || || || ||| |||||||||||||| | ||||||||||||||||||| |
|
|
| T |
23243822 |
agagactttcttgatatcctacttgattatgtcgaggatgaaagctctgagatgaaaattcaaagggttcacgttaaggccttgattatggtaa |
23243915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University