View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14506_high_21 (Length: 366)
Name: NF14506_high_21
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_high_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 39010635 - 39010975
Alignment:
| Q |
1 |
tttttgttttgacaatccgatcaagatctctcaactccatcgaatttcatttcataatcatttaagcactccacctaattaatatttagggaaaattaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39010635 |
tttttgttttgacaatccgatcaagatctctcaactccatcgaatttcgtttcataattatttaagcactccacctaattaatatttagggaaaattaca |
39010734 |
T |
|
| Q |
101 |
caaatctctcttgaactttggttaaatgtcacatgttttttcatgttctttcaagtcaaatcaatttagtatttgttactttaaaaatacgaagcttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39010735 |
caaatctctcttgaactttggttaaatgtcacatgttttttcatgttctttcaagtcaaatcaatttagtatttgttactttaaaaatacgaagcttgaa |
39010834 |
T |
|
| Q |
201 |
tttaaatctcttgttttttccccaagattctatacataaacaaaacaaatttggatagagaaaatgttacatttattcacaccaaaaagctataaaatca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39010835 |
tttaaatctcttgttttttccccaagattctatacataagcaaaacaaatttggatagagaaaatgttacatttcttcacaccaaaaagctataaaatca |
39010934 |
T |
|
| Q |
301 |
taaaaagagcatgatcattgatcaacaacaatgacagatcc |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39010935 |
taaaaagagcatgatcattgatcaacaacaacgacagatcc |
39010975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University