View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_high_27 (Length: 322)
Name: NF14506_high_27
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 14519444 - 14519747
Alignment:
| Q |
1 |
ttttaaaattttgatattttcaggaccaaaatatgtgacgtgacgccttcactttcaaggattcaattggtgattcgttagtaaaaactatttttgataa |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||||||||| | ||||||||| |||||||||| | ||||| ||||| |||||||| |
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| T |
14519444 |
ttttaaaattttgatattttcagaaccaaaatatgtgatgtgacgccttcaaat-caaggattcgattggtgatttgcacgtaaatactatatttgataa |
14519542 |
T |
|
| Q |
101 |
attgattatgagaaagnnnnnnnt-atttattcaagttgaattaaattnnnnnnnttgatgtgcaaa-ggaaatactcacatatcctatgagacttgaat |
198 |
Q |
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|||| ||||||||||| |||||| |||||| ||||| ||| ||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
14519543 |
attgtttatgagaaagaagaaaaacatttatgcaagttaaattatattaaaaatattgatgtaaaaaaggaaatactcacatatcctatgagacttgaat |
14519642 |
T |
|
| Q |
199 |
catctgaatgacgaaagctagtgtttttgtgaccactcacaatctctagtagcaatacgccaaaactatatacatctgccttggctgataatacgccttg |
298 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||| |
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| T |
14519643 |
catctgaatgacgaaagctggtgtttttgtgaccactcacaatctccagtagcaatacgccaaaactatatacgtctgctttagctgataatacgccttg |
14519742 |
T |
|
| Q |
299 |
catgg |
303 |
Q |
| |
|
||||| |
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|
| T |
14519743 |
catgg |
14519747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 173 - 274
Target Start/End: Complemental strand, 36290940 - 36290839
Alignment:
| Q |
173 |
actcacatatcctatgagacttgaatcatctgaatgacgaaagctagtgtttttgtgaccactcacaatctctagtagcaatacgccaaaactatataca |
272 |
Q |
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||||||||||||||||||||||| ||||| |||| ||||||||||||||||||| | |||||||||||||||||||| | ||||||||||||||||||| |
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| T |
36290940 |
actcacatatcctatgagacttggatcatacgaatcacgaaagctagtgtttttgcggccactcacaatctctagtagaagtacgccaaaactatataca |
36290841 |
T |
|
| Q |
273 |
tc |
274 |
Q |
| |
|
|| |
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|
| T |
36290840 |
tc |
36290839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 2690449 - 2690586
Alignment:
| Q |
164 |
aaaggaaatactcacatatcctatgagacttgaatcatctgaatgacgaaagctagtgtttttgtgaccactcacaatctctagtagcaatacgccaaaa |
263 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
2690449 |
aaaggaaatactcacatatcctatgagacttgaatattctgaatcaccaaagctagtgtttttgcggccactcacaatctctagtagcaatacgccaaaa |
2690548 |
T |
|
| Q |
264 |
ctatatacatctgccttggctgataatacgccttgcat |
301 |
Q |
| |
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||||||||||||| |||| |||| |||| ||||||||| |
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| T |
2690549 |
ctatatacatctgacttgactgaaaataagccttgcat |
2690586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 166 - 276
Target Start/End: Original strand, 2698196 - 2698306
Alignment:
| Q |
166 |
aggaaatactcacatatcctatgagacttgaatcatctgaatgacgaaagctagtgtttttgtgaccactcacaatctctagtagcaatacgccaaaact |
265 |
Q |
| |
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|||||| ||| ||||| ||||| ||||| ||||||||||| |||||||||||||||||| || | || ||||||||||||||||| ||||| |||||||| |
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| T |
2698196 |
aggaaacacttacataacctattagactcgaatcatctgagtgacgaaagctagtgtttctgcggccgctcacaatctctagtagtaatacaccaaaact |
2698295 |
T |
|
| Q |
266 |
atatacatctg |
276 |
Q |
| |
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||||||||||| |
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|
| T |
2698296 |
atatacatctg |
2698306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 2690313 - 2690347
Alignment:
| Q |
2 |
tttaaaattttgatattttcaggaccaaaatatgt |
36 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| |
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|
| T |
2690313 |
tttaaaattttgttattttcaggaccaaaatatgt |
2690347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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