View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14506_high_28 (Length: 296)

Name: NF14506_high_28
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14506_high_28
NF14506_high_28
[»] chr5 (1 HSPs)
chr5 (16-296)||(22042245-22042525)


Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 22042245 - 22042525
Alignment:
Q  16 aatatgatttacggtttggtagttttgtgcttctgctgtgaaagggagggaaatcatcagtggaatgaagtgtccttccaagagtcattatgaatcggct 115  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  22042245 aatatgatttacggttcggtagttttgtgcttctgctgtgaaagggagggaaatcatcagtggaatgaagtgtccttccaagagtcattatgaatcgggt 22042344  T
Q  116 ttggccaacatagtttagcacaatttttctaatgccttcaaaatggtaaaaatctcttatggcagtccatcctgtagttagtaaagggagagtttctgaa 215  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22042345 ttggccaacatagtttagcacaatttgtctgatgccttcaaaatggtaaaaatctcttatggcagttcatcctgtagttagtaaagggagagtttctgaa 22042444  T
Q  216 ttgttgaaagttacatggtgactttttccattaatatctatcagattccaaactagtttcaaattgtcgaattcttcaaga 296  Q
    |||||||||||| ||||||||||||||||||||| |||||| |||||||||||| | |||||||  |||||||||||||||    
T  22042445 ttgttgaaagttgcatggtgactttttccattaacatctatgagattccaaactggattcaaatcatcgaattcttcaaga 22042525  T

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