View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14506_high_37 (Length: 233)
Name: NF14506_high_37
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_high_37 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 49691278 - 49691484
Alignment:
| Q |
12 |
agcaaaggacaaatttattgcgtcgcaaggtaatacattaacaaaacatacagaaacagtttaagacattacatggatcattagagttttgcttactatt |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
49691278 |
agcaacggacaaatttattgcgtcgcaaggtaatgcattaacaaaacatacaggaacagtttaagacattacatcgatcattagagttttgcttactatt |
49691377 |
T |
|
| Q |
112 |
tcctatttgaattattgttatgcaggaagggtagaagtccagctcggaagctaggattggttttaggtgatgtacatactttaatgttcaatataactag |
211 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49691378 |
tcctatttgaattattattatgcaggaagggtagaagtccagctcggaagctaggattggttttaggtgatgtacatactttaatgttcaatataactag |
49691477 |
T |
|
| Q |
212 |
tttgtgt |
218 |
Q |
| |
|
||||||| |
|
|
| T |
49691478 |
tttgtgt |
49691484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 49679641 - 49679753
Alignment:
| Q |
15 |
aaaggacaaatttattgcgtcgcaaggtaatacattaacaaaacatacagaaacagtttaagacattacatggatcattagagttttgcttactatttcc |
114 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | |||||||||| |||||||||| |||| || |||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
49679641 |
aaaggacaaatttattgccccgcaaggtaatgcgttaacaaaacttacagaaaca-tttacgatattacatggatcattagaattttgctaactacttcc |
49679739 |
T |
|
| Q |
115 |
tatttgaattattg |
128 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
49679740 |
tatttgaattattg |
49679753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 49680376 - 49680465
Alignment:
| Q |
129 |
ttatgcaggaagggtagaagtccagctcggaagctaggattggttttaggtgatgtacatactttaatgttcaatataactagtttgtgt |
218 |
Q |
| |
|
|||||||||| |||||||||| || || |||||||| ||||||||||||||||||||| |||||||| ||||||| ||||||||||||| |
|
|
| T |
49680376 |
ttatgcaggaggggtagaagttcaacttggaagctaatattggttttaggtgatgtacaaactttaatattcaatacaactagtttgtgt |
49680465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University