View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_high_38 (Length: 233)
Name: NF14506_high_38
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 46680858 - 46680754
Alignment:
| Q |
113 |
gctgaccccaattttctagtgacaagtcaaagaagagcatattaattaatcaaacaatattatcttgcttgttgccaattccatggatttccaaaaccat |
212 |
Q |
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| T |
46680858 |
gctgaccccaattttctagtgacaagtcaaagaagagcatattaattaatcaaacaatattatcttgcttgttgccaattccatggatttccaaaaccat |
46680759 |
T |
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| Q |
213 |
gactg |
217 |
Q |
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||||| |
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| T |
46680758 |
gactg |
46680754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 46680970 - 46680927
Alignment:
| Q |
1 |
agcataaaaccaatgtcacaagcactacgcaggatataggagca |
44 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46680970 |
agcataaaaccaatgtcacaagcactacgcaggatataggagca |
46680927 |
T |
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