View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14506_high_4 (Length: 616)
Name: NF14506_high_4
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 81 - 437
Target Start/End: Original strand, 34677814 - 34678170
Alignment:
| Q |
81 |
tagaagaaactatagcagtgttttctaagctacatgttcagctgcatttgctctccatgtttccagaagagaaaatactaacagtgaagttagcctttca |
180 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34677814 |
tagaagaaactatagcagagttttctaagctacatgttcagctgcatttgctctccatgtttccagaagagaaaatactaacagtgaagttagcctttca |
34677913 |
T |
|
| Q |
181 |
ttttcatgaaaacagaacaacaaaaagctaagccgttattttgattattctagatggaactatacgtagtgttatgacttatgaatcttcaagttaaact |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34677914 |
ttttcatgaaaacagaacaacaaaaagctaagccgttattttgattattctaggtggaactatacgtagtgttatgacttatgaatcttcaagttaaact |
34678013 |
T |
|
| Q |
281 |
gtttaacttgtgtgcaattgaatcatcgatcacatcatgaaataatccttattttctacgatgatttgatgagtcttgtatatgaacattcatgtgatgt |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34678014 |
gtttaacttgtgtgcaattgaatcatcgatcacatcatgaaataatccttattttctacgatgatttgatgactcttgtatatgaacattcatgtgatgt |
34678113 |
T |
|
| Q |
381 |
actcttttgtttataatctgagagtgaaacagtagagagagctaaatgctcacagcg |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34678114 |
actcttttgtttataatctgagagtgaaacagtagagagagctaaatgctcacagcg |
34678170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 511 - 600
Target Start/End: Original strand, 34678237 - 34678326
Alignment:
| Q |
511 |
ccacatacactgtttacacacataattaacaaatccagatcatcacagtatgttccatggtctatgatatcaatcaatatatgacatttc |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34678237 |
ccacatacactgtttacacacataattaacaaatccagatcatcacagtatgttccatggtctattatatcaatcaatatatgacatttc |
34678326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 34677735 - 34677780
Alignment:
| Q |
13 |
ataatactaataggagagttagggttgttttatctatgattagaat |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34677735 |
ataatactaataggagagttagggttgttttatctatgattagaat |
34677780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University